Willem van Schaik

Publications

  1. 2019
  2. Published

    Gut microbiota and colonization resistance against bacterial enteric infection

    Ducarmon, Q. R., Zwittink, R. D., Hornung, B. V. H., Willem van Schaik, Young, V. B. & Kuijper, E. J., 1 Sep 2019, In : Microbiology and Molecular Biology Reviews. 83, 3, p. e00007-e00019

    Research output: Contribution to journalReview article

  3. Published

    Enterococcus faecium genome dynamics during long-term asymptomatic patient gut colonization

    Bayjanov, J. R., Baan, J., Rogers, M. R. C., Troelstra, A., Willems, R. J. L. & Willem van Schaik, 1 Jul 2019, In : Microbial Genomics. 5, 7, 000277.

    Research output: Contribution to journalArticle

  4. Published

    Do we really understand how faecal microbiota transplantation works?

    Mohammed Nabil Quraishi, Alan McNally & Willem van Schaik, 1 Apr 2019, In : EBioMedicine. 42, p. 39 1 p.

    Research output: Contribution to journalLetter

  5. 2018
  6. Published

    Prediction of the intestinal resistome by a three-dimensional structure-based method

    Ruppé, E., Ghozlane, A., Tap, J., Pons, N., Alvarez, A-S., Maziers, N., Cuesta, T., Hernando-Amado, S., Clares, I., Martínez, J. L., Coque, T. M., Baquero, F., Lanza, V. F., Máiz, L., Goulenok, T., de Lastours, V., Amor, N., Fantin, B., Wieder, I., Andremont, A. & 16 others, Willem van Schaik, Rogers, M., Zhang, X., Willems, R. J. L., de Brevern, A. G., Batto, J-M., Blottière, H. M., Léonard, P., Léjard, V., Letur, A., Levenez, F., Weiszer, K., Haimet, F., Doré, J., Kennedy, S. P. & Ehrlich, S. D., 26 Nov 2018, In : Nature Microbiology. 4, p. 112-123 12 p.

    Research output: Contribution to journalArticle

  7. E-pub ahead of print

    Limited influence of hospital wastewater on the microbiome and resistome of wastewater in a community sewerage system

    Buelow, E., Bayjanov, J. R., Majoor, E., Willems, R. J. L., Bonten, M. J. M., Schmitt, H. & Willem van Schaik, 14 May 2018, In : FEMS Microbiology Ecology . 94, 7, 9 p., fiy087.

    Research output: Contribution to journalArticle

  8. Published

    In-depth resistome analysis by targeted metagenomics

    Lanza, V. F., Baquero, F., Martínez, J. L., Ramos-Ruíz, R., González-Zorn, B., Andremont, A., Sánchez-Valenzuela, A., Ehrlich, S. D., Kennedy, S., Ruppé, E., Willem van Schaik, Willems, R. J., de la Cruz, F. & Coque, T. M., 15 Jan 2018, In : Microbiome. 6, 11

    Research output: Contribution to journalArticle

  9. 2017
  10. Published

    RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum

    Zhang, X., de Maat, V., Guzmán Prieto, A. M., Prajsnar, T. K., Bayjanov, J. R., de Been, M., Rogers, M. R. C., Bonten, M. J. M., Mesnage, S., Willems, R. J. L. & Willem van Schaik, 21 Nov 2017, In : BMC Genomics. 18, 1, 12 p., 893.

    Research output: Contribution to journalArticle

  11. Published

    On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data

    Arredondo-Alonso, S., Willems, R. J., Willem van Schaik & Schürch, A. C., 1 Oct 2017, In : Microbial Genomics. 3, 10, 8 p., e000128.

    Research output: Contribution to journalArticle

  12. Published

    Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis

    Quainoo, S., Coolen, J. P. M., van Hijum, S. A. F. T., Huynen, M. A., Melchers, W. J. G., Willem van Schaik & Wertheim, H. F. L., Oct 2017, In : Clinical Microbiology Reviews. 30, 4, p. 1015-1063 49 p.

    Research output: Contribution to journalArticle

  13. Published

    Characterization of Enterococcus isolates colonizing the intestinal tract of intensive care unit patients receiving selective digestive decontamination

    Bello Gonzalez, T. D. J., Pham, P., Top, J., Willems, R. J. L., Willem van Schaik, van Passel, M. W. J. & Smidt, H., 28 Aug 2017, In : Frontiers in Microbiology. 8, AUG, 1596.

    Research output: Contribution to journalArticle

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