Semantically annotated provenance in the Life Science Grid

Bin Cao*, Beth Plale, Girish Subramanian, Paolo Missier, Carole Goble, Yogesh Simmhan

*Corresponding author for this work

Research output: Contribution to journalConference articlepeer-review

Abstract

Selected semantic annotation on raw provenance data can help bridge the gap between low level provenance events (e.g., service invocations, data creation, message passing) and the high-level view that the user has of his/her investigation (e.g., data retrieval and analysis). In this initial investigation we added semantically annotated provenance to the Life Science Grid, a cyber-infrastructure framework supporting interactive data exploration and automated data analysis tools, through (i) automated data provenance collection and (ii) automated semantic enrichment of the collected provenance metadata. We use a paradigmatic life sciences use case of interactive data exploration to show that semantically annotated provenance can help users recognize the occurrence of specific patterns of investigation from an otherwise low-level sequence of elementary interaction events.

Original languageEnglish
JournalCEUR Workshop Proceedings
Volume526
Publication statusPublished - 2009
Event1st International Workshop on the Role of Semantic Web in Provenance Management, SWPM 2009, Collocated with the 8th International Semantic Web Conference, ISWC 2009 - Washington, DC, United States
Duration: 25 Oct 200925 Oct 2009

Keywords

  • Life Sciences
  • Provenance
  • Semantic annotation

ASJC Scopus subject areas

  • General Computer Science

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