Projects per year
Abstract
The rapid advance of nanotechnology has led to the development and widespread application of nanomaterials, raising concerns regarding their potential adverse effects on human health and the environment. Traditional (experimental) methods for assessing the nanoparticles (NPs) safety are time-consuming, expensive, and resource-intensive, and raise ethical concerns due to their reliance on animals. To address these challenges, we propose an in silico workflow that serves as an alternative or complementary approach to conventional hazard and risk assessment strategies, which incorporates state-of-the-art computational methodologies. In this study we present an automated machine learning (autoML) scheme that employs dose-response toxicity data for silver (Ag), titanium dioxide (TiO2), and copper oxide (CuO) NPs. This model is further enriched with atomistic descriptors to capture the NPs’ underlying structural properties. To overcome the issue of limited data availability, synthetic data generation techniques are used. These techniques help in broadening the dataset, thus improving the representation of different NP classes. A key aspect of this approach is a novel three-step applicability domain method (which includes the development of a local similarity approach) that enhances user confidence in the results by evaluating the prediction's reliability. We anticipate that this approach will significantly expedite the nanosafety assessment process enabling regulation to keep pace with innovation, and will provide valuable insights for the design and development of safe and sustainable NPs. The ML model developed in this study is made available to the scientific community as an easy-to-use web-service through the Enalos Cloud Platform (www.enaloscloud.novamechanics.com/sabydoma/safenanoscope/), facilitating broader access and collaborative advancements in nanosafety.
Original language | English |
---|---|
Pages (from-to) | 47-60 |
Number of pages | 14 |
Journal | Computational and Structural Biotechnology Journal |
Volume | 25 |
Early online date | 30 Mar 2024 |
DOIs | |
Publication status | Published - Dec 2024 |
Bibliographical note
Publisher Copyright:© 2024 The Authors
Keywords
- Automated machine learning
- Nanoinformatics
- Safety and sustainability by design
- Synthetic data
ASJC Scopus subject areas
- Biotechnology
- Biophysics
- Structural Biology
- Biochemistry
- Genetics
- Computer Science Applications
Fingerprint
Dive into the research topics of 'In silico assessment of nanoparticle toxicity powered by the Enalos Cloud Platform: Integrating automated machine learning and synthetic data for enhanced nanosafety evaluation'. Together they form a unique fingerprint.-
CompSafeNano: NanoInformatics Approaches for Safe-by-Design NanoMaterials
Valsami-Jones, E. (Co-Investigator) & Lynch, I. (Principal Investigator)
1/09/21 → 31/08/25
Project: EU
-
WorldFAIR - Global cooperation on FAIR data policy and practice
Lynch, I. (Principal Investigator)
UKRI Horizon Europe Underwriting – Innovate UK
1/06/22 → 31/05/24
Project: Research
-
SABYDOMA: Safety BY Design Of nanoMaterials - From Lab Manufacture to Governance and Communication: Progressing Up the TRL Ladder
Valsami-Jones, E. (Principal Investigator)
1/04/20 → 31/03/24
Project: EU