Data lineage model for taverna workflows with lightweight annotation requirements

Paolo Missier; Khalid Belhajjame; Jun Zhao; Marco Roos; Carole Goble

doi:10.1007/978-3-540-89965-5_4

Data lineage model for taverna workflows with lightweight annotation requirements

Paolo Missier, Khalid Belhajjame, Jun Zhao, Marco Roos, Carole Goble

Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

The provenance, or lineage, of a workflow data product can be reconstructed by keeping a complete trace of workflow execution. This lineage information, however, is likely to be both imprecise, because of the black-box nature of the services that compose the workflow, and noisy, because of the many trivial data transformations that obscure the intended purpose of the workflow. In this paper we argue that these shortcomings can be alleviated by introducing a small set of optional lightweight annotations to the workflow, in a principled way. We begin by presenting a baseline, annotation-free lineage model for the Taverna workflow system, and then show how the proposed annotations improve the results of fundamental lineage queries.

Original language	English
Title of host publication	Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers
Editors	Juliana Freire, David Koop, Juliana Freire, Juliana Freire, Luc Moreau
Publisher	Springer Verlag
Pages	17-30
Number of pages	14
ISBN (Print)	9783540899648
DOIs	https://doi.org/10.1007/978-3-540-89965-5_4
Publication status	Published - 2008
Event	2nd International Provenance and Annotation Workshop, IPAW 2008 - Salt Lake City, United States Duration: 17 Jun 2008 → 18 Jun 2008

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	5272
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	2nd International Provenance and Annotation Workshop, IPAW 2008
Country/Territory	United States
City	Salt Lake City
Period	17/06/08 → 18/06/08

Bibliographical note

Publisher Copyright:
© Springer-Verlag Berlin Heidelberg 2008.

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-540-89965-5_4

Cite this

Missier, P., Belhajjame, K., Zhao, J., Roos, M., & Goble, C. (2008). Data lineage model for taverna workflows with lightweight annotation requirements. In J. Freire, D. Koop, J. Freire, J. Freire, & L. Moreau (Eds.), Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers (pp. 17-30). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5272). Springer Verlag. https://doi.org/10.1007/978-3-540-89965-5_4

Missier, Paolo ; Belhajjame, Khalid ; Zhao, Jun et al. / Data lineage model for taverna workflows with lightweight annotation requirements. Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers. editor / Juliana Freire ; David Koop ; Juliana Freire ; Juliana Freire ; Luc Moreau. Springer Verlag, 2008. pp. 17-30 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

@inproceedings{ce38f04e871640ac9b6082ce8c752774,

title = "Data lineage model for taverna workflows with lightweight annotation requirements",

abstract = "The provenance, or lineage, of a workflow data product can be reconstructed by keeping a complete trace of workflow execution. This lineage information, however, is likely to be both imprecise, because of the black-box nature of the services that compose the workflow, and noisy, because of the many trivial data transformations that obscure the intended purpose of the workflow. In this paper we argue that these shortcomings can be alleviated by introducing a small set of optional lightweight annotations to the workflow, in a principled way. We begin by presenting a baseline, annotation-free lineage model for the Taverna workflow system, and then show how the proposed annotations improve the results of fundamental lineage queries.",

author = "Paolo Missier and Khalid Belhajjame and Jun Zhao and Marco Roos and Carole Goble",

note = "Publisher Copyright: {\textcopyright} Springer-Verlag Berlin Heidelberg 2008.; 2nd International Provenance and Annotation Workshop, IPAW 2008 ; Conference date: 17-06-2008 Through 18-06-2008",

year = "2008",

doi = "10.1007/978-3-540-89965-5_4",

language = "English",

isbn = "9783540899648",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer Verlag",

pages = "17--30",

editor = "Juliana Freire and David Koop and Juliana Freire and Juliana Freire and Luc Moreau",

booktitle = "Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers",

}

Missier, P, Belhajjame, K, Zhao, J, Roos, M & Goble, C 2008, Data lineage model for taverna workflows with lightweight annotation requirements. in J Freire, D Koop, J Freire, J Freire & L Moreau (eds), Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5272, Springer Verlag, pp. 17-30, 2nd International Provenance and Annotation Workshop, IPAW 2008, Salt Lake City, United States, 17/06/08. https://doi.org/10.1007/978-3-540-89965-5_4

Data lineage model for taverna workflows with lightweight annotation requirements. / Missier, Paolo; Belhajjame, Khalid; Zhao, Jun et al.
Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers. ed. / Juliana Freire; David Koop; Juliana Freire; Juliana Freire; Luc Moreau. Springer Verlag, 2008. p. 17-30 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5272).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - Data lineage model for taverna workflows with lightweight annotation requirements

AU - Missier, Paolo

AU - Belhajjame, Khalid

AU - Zhao, Jun

AU - Roos, Marco

AU - Goble, Carole

N1 - Publisher Copyright: © Springer-Verlag Berlin Heidelberg 2008.

PY - 2008

Y1 - 2008

N2 - The provenance, or lineage, of a workflow data product can be reconstructed by keeping a complete trace of workflow execution. This lineage information, however, is likely to be both imprecise, because of the black-box nature of the services that compose the workflow, and noisy, because of the many trivial data transformations that obscure the intended purpose of the workflow. In this paper we argue that these shortcomings can be alleviated by introducing a small set of optional lightweight annotations to the workflow, in a principled way. We begin by presenting a baseline, annotation-free lineage model for the Taverna workflow system, and then show how the proposed annotations improve the results of fundamental lineage queries.

AB - The provenance, or lineage, of a workflow data product can be reconstructed by keeping a complete trace of workflow execution. This lineage information, however, is likely to be both imprecise, because of the black-box nature of the services that compose the workflow, and noisy, because of the many trivial data transformations that obscure the intended purpose of the workflow. In this paper we argue that these shortcomings can be alleviated by introducing a small set of optional lightweight annotations to the workflow, in a principled way. We begin by presenting a baseline, annotation-free lineage model for the Taverna workflow system, and then show how the proposed annotations improve the results of fundamental lineage queries.

UR - http://www.scopus.com/inward/record.url?scp=84961838355&partnerID=8YFLogxK

U2 - 10.1007/978-3-540-89965-5_4

DO - 10.1007/978-3-540-89965-5_4

M3 - Conference contribution

AN - SCOPUS:84961838355

SN - 9783540899648

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 17

EP - 30

BT - Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers

A2 - Freire, Juliana

A2 - Koop, David

A2 - Freire, Juliana

A2 - Moreau, Luc

PB - Springer Verlag

T2 - 2nd International Provenance and Annotation Workshop, IPAW 2008

Y2 - 17 June 2008 through 18 June 2008

ER -

Missier P, Belhajjame K, Zhao J, Roos M, Goble C. Data lineage model for taverna workflows with lightweight annotation requirements. In Freire J, Koop D, Freire J, Freire J, Moreau L, editors, Provenance and Annotation of Data and Processes - 2nd International Provenance and Annotation Workshop, IPAW 2008, Revised Selected Papers. Springer Verlag. 2008. p. 17-30. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-540-89965-5_4

Data lineage model for taverna workflows with lightweight annotation requirements

Abstract

Publication series

Conference

Bibliographical note

ASJC Scopus subject areas

Access to Document

Fingerprint

Cite this