The transcription factor encyclopedia

Dimas Yusuf; Stefanie L Butland; Magdalena I Swanson; Eugene Bolotin; Amy Ticoll; Warren A Cheung; Xiao Yu Cindy Zhang; Christopher T D Dickman; Debra L Fulton; Jonathan S Lim; Jake M Schnabl; Oscar H P Ramos; Mireille Vasseur-Cognet; Charles N de Leeuw; Elizabeth M Simpson; Gerhart U Ryffel; Eric W-F Lam; Ralf Kist; Miranda S C Wilson; Raquel Marco-Ferreres; Jan J Brosens; Leonardo L Beccari; Paola Bovolenta; Bérénice A Benayoun; Lara J Monteiro; Helma D C Schwenen; Lars Grontved; Elizabeth Wederell; Susanne Mandrup; Reiner A Veitia; Harini Chakravarthy; Pamela A Hoodless; M Michela Mancarelli; Bruce E Torbett; Alison H Banham; Sekhar P Reddy; Rebecca L Cullum; Michaela Liedtke; Mario P Tschan; Michelle Vaz; Angie Rizzino; Mariastella Zannini; Seth Frietze; Peggy J Farnham; Astrid Eijkelenboom; Philip J Brown; David Laperrière; Dominique Leprince; Tiziana de Cristofaro; Kelly L Prince; Marrit Putker; Luis del Peso; Gieri Camenisch; Roland H Wenger; Michal Mikula; Marieke Rozendaal; Sylvie Mader; Jerzy Ostrowski; Simon J Rhodes; Capucine Van Rechem; Gaylor Boulay; Sam W Z Olechnowicz; Mary B Breslin; Michael S Lan; Kyster K Nanan; Michael Wegner; Juan Hou; Rachel D Mullen; Stephanie C Colvin; Peter John Noy; Carol F Webb; Matthew E Witek; Scott Ferrell; Juliet M Daniel; Jason Park; Scott A Waldman; Daniel J Peet; Michael Taggart; Padma-Sheela Jayaraman; Julien J Karrich; Bianca Blom; Farhad Vesuna; Henriette O'Geen; Yunfu Sun; Richard M Gronostajski; Mark W Woodcroft; Margaret R Hough; Edwin Chen; G Nicholas Europe-Finner; Magdalena Karolczak-Bayatti; Jarrod Bailey; Oliver Hankinson; Venu Raman; David P LeBrun; Shyam Biswal; Christopher J Harvey; Jason P DeBruyne; John B Hogenesch; Robert F Hevner; Christophe Héligon; Xin M Luo; Marissa Cathleen Blank; Kathleen Joyce Millen; David S Sharlin; Douglas Forrest; Karin Dahlman-Wright; Chunyan Zhao; Yuriko Mishima; Satrajit Sinha; Rumela Chakrabarti; Elodie Portales-Casamar; Frances M Sladek; Philip H Bradley; Wyeth W Wasserman

doi:10.1186/gb-2012-13-3-r24

The transcription factor encyclopedia

Dimas Yusuf, Stefanie L Butland, Magdalena I Swanson, Eugene Bolotin, Amy Ticoll, Warren A Cheung, Xiao Yu Cindy Zhang, Christopher T D Dickman, Debra L Fulton, Jonathan S Lim, Jake M Schnabl, Oscar H P Ramos, Mireille Vasseur-Cognet, Charles N de Leeuw, Elizabeth M Simpson, Gerhart U Ryffel, Eric W-F Lam, Ralf Kist, Miranda S C Wilson, Raquel Marco-FerreresJan J Brosens, Leonardo L Beccari, Paola Bovolenta, Bérénice A Benayoun, Lara J Monteiro, Helma D C Schwenen, Lars Grontved, Elizabeth Wederell, Susanne Mandrup, Reiner A Veitia, Harini Chakravarthy, Pamela A Hoodless, M Michela Mancarelli, Bruce E Torbett, Alison H Banham, Sekhar P Reddy, Rebecca L Cullum, Michaela Liedtke, Mario P Tschan, Michelle Vaz, Angie Rizzino, Mariastella Zannini, Seth Frietze, Peggy J Farnham, Astrid Eijkelenboom, Philip J Brown, David Laperrière, Dominique Leprince, Tiziana de Cristofaro, Kelly L Prince, Marrit Putker, Luis del Peso, Gieri Camenisch, Roland H Wenger, Michal Mikula, Marieke Rozendaal, Sylvie Mader, Jerzy Ostrowski, Simon J Rhodes, Capucine Van Rechem, Gaylor Boulay, Sam W Z Olechnowicz, Mary B Breslin, Michael S Lan, Kyster K Nanan, Michael Wegner, Juan Hou, Rachel D Mullen, Stephanie C Colvin, Peter John Noy, Carol F Webb, Matthew E Witek, Scott Ferrell, Juliet M Daniel, Jason Park, Scott A Waldman, Daniel J Peet, Michael Taggart, Padma-Sheela Jayaraman, Julien J Karrich, Bianca Blom, Farhad Vesuna, Henriette O'Geen, Yunfu Sun, Richard M Gronostajski, Mark W Woodcroft, Margaret R Hough, Edwin Chen, G Nicholas Europe-Finner, Magdalena Karolczak-Bayatti, Jarrod Bailey, Oliver Hankinson, Venu Raman, David P LeBrun, Shyam Biswal, Christopher J Harvey, Jason P DeBruyne, John B Hogenesch, Robert F Hevner, Christophe Héligon, Xin M Luo, Marissa Cathleen Blank, Kathleen Joyce Millen, David S Sharlin, Douglas Forrest, Karin Dahlman-Wright, Chunyan Zhao, Yuriko Mishima, Satrajit Sinha, Rumela Chakrabarti, Elodie Portales-Casamar, Frances M Sladek, Philip H Bradley, Wyeth W Wasserman

Research output: Contribution to journal › Article › peer-review

70 Citations (Scopus)

Abstract

Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

Original language	English
Article number	R24
Journal	Genome Biology
Volume	13
Issue number	3
DOIs	https://doi.org/10.1186/gb-2012-13-3-r24
Publication status	Published - 29 Mar 2012

Keywords

Rats
Animals
Transcription Factors
Access to Information
Humans
Databases, Protein
Encyclopedias as Topic
Transcription, Genetic
Mice
Computational Biology
Internet

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10.1186/gb-2012-13-3-r24Licence: Creative Commons: Attribution (CC BY)

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Yusuf, D., Butland, S. L., Swanson, M. I., Bolotin, E., Ticoll, A., Cheung, W. A., Zhang, X. Y. C., Dickman, C. T. D., Fulton, D. L., Lim, J. S., Schnabl, J. M., Ramos, O. H. P., Vasseur-Cognet, M., de Leeuw, C. N., Simpson, E. M., Ryffel, G. U., Lam, E. W.-F., Kist, R., Wilson, M. S. C., ... Wasserman, W. W. (2012). The transcription factor encyclopedia. Genome Biology, 13(3), Article R24. https://doi.org/10.1186/gb-2012-13-3-r24

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title = "The transcription factor encyclopedia",

abstract = "Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.",

keywords = "Rats, Animals, Transcription Factors, Access to Information, Humans, Databases, Protein, Encyclopedias as Topic, Transcription, Genetic, Mice, Computational Biology, Internet",

author = "Dimas Yusuf and Butland, {Stefanie L} and Swanson, {Magdalena I} and Eugene Bolotin and Amy Ticoll and Cheung, {Warren A} and Zhang, {Xiao Yu Cindy} and Dickman, {Christopher T D} and Fulton, {Debra L} and Lim, {Jonathan S} and Schnabl, {Jake M} and Ramos, {Oscar H P} and Mireille Vasseur-Cognet and {de Leeuw}, {Charles N} and Simpson, {Elizabeth M} and Ryffel, {Gerhart U} and Lam, {Eric W-F} and Ralf Kist and Wilson, {Miranda S C} and Raquel Marco-Ferreres and Brosens, {Jan J} and Beccari, {Leonardo L} and Paola Bovolenta and Benayoun, {B{\'e}r{\'e}nice A} and Monteiro, {Lara J} and Schwenen, {Helma D C} and Lars Grontved and Elizabeth Wederell and Susanne Mandrup and Veitia, {Reiner A} and Harini Chakravarthy and Hoodless, {Pamela A} and Mancarelli, {M Michela} and Torbett, {Bruce E} and Banham, {Alison H} and Reddy, {Sekhar P} and Cullum, {Rebecca L} and Michaela Liedtke and Tschan, {Mario P} and Michelle Vaz and Angie Rizzino and Mariastella Zannini and Seth Frietze and Farnham, {Peggy J} and Astrid Eijkelenboom and Brown, {Philip J} and David Laperri{\`e}re and Dominique Leprince and {de Cristofaro}, Tiziana and Prince, {Kelly L} and Marrit Putker and {del Peso}, Luis and Gieri Camenisch and Wenger, {Roland H} and Michal Mikula and Marieke Rozendaal and Sylvie Mader and Jerzy Ostrowski and Rhodes, {Simon J} and {Van Rechem}, Capucine and Gaylor Boulay and Olechnowicz, {Sam W Z} and Breslin, {Mary B} and Lan, {Michael S} and Nanan, {Kyster K} and Michael Wegner and Juan Hou and Mullen, {Rachel D} and Colvin, {Stephanie C} and Noy, {Peter John} and Webb, {Carol F} and Witek, {Matthew E} and Scott Ferrell and Daniel, {Juliet M} and Jason Park and Waldman, {Scott A} and Peet, {Daniel J} and Michael Taggart and Padma-Sheela Jayaraman and Karrich, {Julien J} and Bianca Blom and Farhad Vesuna and Henriette O'Geen and Yunfu Sun and Gronostajski, {Richard M} and Woodcroft, {Mark W} and Hough, {Margaret R} and Edwin Chen and Europe-Finner, {G Nicholas} and Magdalena Karolczak-Bayatti and Jarrod Bailey and Oliver Hankinson and Venu Raman and LeBrun, {David P} and Shyam Biswal and Harvey, {Christopher J} and DeBruyne, {Jason P} and Hogenesch, {John B} and Hevner, {Robert F} and Christophe H{\'e}ligon and Luo, {Xin M} and Blank, {Marissa Cathleen} and Millen, {Kathleen Joyce} and Sharlin, {David S} and Douglas Forrest and Karin Dahlman-Wright and Chunyan Zhao and Yuriko Mishima and Satrajit Sinha and Rumela Chakrabarti and Elodie Portales-Casamar and Sladek, {Frances M} and Bradley, {Philip H} and Wasserman, {Wyeth W}",

year = "2012",

month = mar,

day = "29",

doi = "10.1186/gb-2012-13-3-r24",

language = "English",

volume = "13",

journal = "Genome Biology",

issn = "1474-760X",

publisher = "BioMed Central",

number = "3",

}

Yusuf, D, Butland, SL, Swanson, MI, Bolotin, E, Ticoll, A, Cheung, WA, Zhang, XYC, Dickman, CTD, Fulton, DL, Lim, JS, Schnabl, JM, Ramos, OHP, Vasseur-Cognet, M, de Leeuw, CN, Simpson, EM, Ryffel, GU, Lam, EW-F, Kist, R, Wilson, MSC, Marco-Ferreres, R, Brosens, JJ, Beccari, LL, Bovolenta, P, Benayoun, BA, Monteiro, LJ, Schwenen, HDC, Grontved, L, Wederell, E, Mandrup, S, Veitia, RA, Chakravarthy, H, Hoodless, PA, Mancarelli, MM, Torbett, BE, Banham, AH, Reddy, SP, Cullum, RL, Liedtke, M, Tschan, MP, Vaz, M, Rizzino, A, Zannini, M, Frietze, S, Farnham, PJ, Eijkelenboom, A, Brown, PJ, Laperrière, D, Leprince, D, de Cristofaro, T, Prince, KL, Putker, M, del Peso, L, Camenisch, G, Wenger, RH, Mikula, M, Rozendaal, M, Mader, S, Ostrowski, J, Rhodes, SJ, Van Rechem, C, Boulay, G, Olechnowicz, SWZ, Breslin, MB, Lan, MS, Nanan, KK, Wegner, M, Hou, J, Mullen, RD, Colvin, SC, Noy, PJ, Webb, CF, Witek, ME, Ferrell, S, Daniel, JM, Park, J, Waldman, SA, Peet, DJ, Taggart, M, Jayaraman, P-S, Karrich, JJ, Blom, B, Vesuna, F, O'Geen, H, Sun, Y, Gronostajski, RM, Woodcroft, MW, Hough, MR, Chen, E, Europe-Finner, GN, Karolczak-Bayatti, M, Bailey, J, Hankinson, O, Raman, V, LeBrun, DP, Biswal, S, Harvey, CJ, DeBruyne, JP, Hogenesch, JB, Hevner, RF, Héligon, C, Luo, XM, Blank, MC, Millen, KJ, Sharlin, DS, Forrest, D, Dahlman-Wright, K, Zhao, C, Mishima, Y, Sinha, S, Chakrabarti, R, Portales-Casamar, E, Sladek, FM, Bradley, PH & Wasserman, WW 2012, 'The transcription factor encyclopedia', Genome Biology, vol. 13, no. 3, R24. https://doi.org/10.1186/gb-2012-13-3-r24

TY - JOUR

T1 - The transcription factor encyclopedia

AU - Yusuf, Dimas

AU - Butland, Stefanie L

AU - Swanson, Magdalena I

AU - Bolotin, Eugene

AU - Ticoll, Amy

AU - Cheung, Warren A

AU - Zhang, Xiao Yu Cindy

AU - Dickman, Christopher T D

AU - Fulton, Debra L

AU - Lim, Jonathan S

AU - Schnabl, Jake M

AU - Ramos, Oscar H P

AU - Vasseur-Cognet, Mireille

AU - de Leeuw, Charles N

AU - Simpson, Elizabeth M

AU - Ryffel, Gerhart U

AU - Lam, Eric W-F

AU - Kist, Ralf

AU - Wilson, Miranda S C

AU - Marco-Ferreres, Raquel

AU - Brosens, Jan J

AU - Beccari, Leonardo L

AU - Bovolenta, Paola

AU - Benayoun, Bérénice A

AU - Monteiro, Lara J

AU - Schwenen, Helma D C

AU - Grontved, Lars

AU - Wederell, Elizabeth

AU - Mandrup, Susanne

AU - Veitia, Reiner A

AU - Chakravarthy, Harini

AU - Hoodless, Pamela A

AU - Mancarelli, M Michela

AU - Torbett, Bruce E

AU - Banham, Alison H

AU - Reddy, Sekhar P

AU - Cullum, Rebecca L

AU - Liedtke, Michaela

AU - Tschan, Mario P

AU - Vaz, Michelle

AU - Rizzino, Angie

AU - Zannini, Mariastella

AU - Frietze, Seth

AU - Farnham, Peggy J

AU - Eijkelenboom, Astrid

AU - Brown, Philip J

AU - Laperrière, David

AU - Leprince, Dominique

AU - de Cristofaro, Tiziana

AU - Prince, Kelly L

AU - Putker, Marrit

AU - del Peso, Luis

AU - Camenisch, Gieri

AU - Wenger, Roland H

AU - Mikula, Michal

AU - Rozendaal, Marieke

AU - Mader, Sylvie

AU - Ostrowski, Jerzy

AU - Rhodes, Simon J

AU - Van Rechem, Capucine

AU - Boulay, Gaylor

AU - Olechnowicz, Sam W Z

AU - Breslin, Mary B

AU - Lan, Michael S

AU - Nanan, Kyster K

AU - Wegner, Michael

AU - Hou, Juan

AU - Mullen, Rachel D

AU - Colvin, Stephanie C

AU - Noy, Peter John

AU - Webb, Carol F

AU - Witek, Matthew E

AU - Ferrell, Scott

AU - Daniel, Juliet M

AU - Park, Jason

AU - Waldman, Scott A

AU - Peet, Daniel J

AU - Taggart, Michael

AU - Jayaraman, Padma-Sheela

AU - Karrich, Julien J

AU - Blom, Bianca

AU - Vesuna, Farhad

AU - O'Geen, Henriette

AU - Sun, Yunfu

AU - Gronostajski, Richard M

AU - Woodcroft, Mark W

AU - Hough, Margaret R

AU - Chen, Edwin

AU - Europe-Finner, G Nicholas

AU - Karolczak-Bayatti, Magdalena

AU - Bailey, Jarrod

AU - Hankinson, Oliver

AU - Raman, Venu

AU - LeBrun, David P

AU - Biswal, Shyam

AU - Harvey, Christopher J

AU - DeBruyne, Jason P

AU - Hogenesch, John B

AU - Hevner, Robert F

AU - Héligon, Christophe

AU - Luo, Xin M

AU - Blank, Marissa Cathleen

AU - Millen, Kathleen Joyce

AU - Sharlin, David S

AU - Forrest, Douglas

AU - Dahlman-Wright, Karin

AU - Zhao, Chunyan

AU - Mishima, Yuriko

AU - Sinha, Satrajit

AU - Chakrabarti, Rumela

AU - Portales-Casamar, Elodie

AU - Sladek, Frances M

AU - Bradley, Philip H

AU - Wasserman, Wyeth W

PY - 2012/3/29

Y1 - 2012/3/29

N2 - Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

AB - Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

KW - Rats

KW - Animals

KW - Transcription Factors

KW - Access to Information

KW - Humans

KW - Databases, Protein

KW - Encyclopedias as Topic

KW - Transcription, Genetic

KW - Mice

KW - Computational Biology

KW - Internet

U2 - 10.1186/gb-2012-13-3-r24

DO - 10.1186/gb-2012-13-3-r24

M3 - Article

C2 - 22458515

SN - 1474-760X

VL - 13

JO - Genome Biology

JF - Genome Biology

IS - 3

M1 - R24

ER -

The transcription factor encyclopedia

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