The transcription factor encyclopedia

Research output: Contribution to journalArticle

Standard

The transcription factor encyclopedia. / Yusuf, Dimas; Butland, Stefanie L; Swanson, Magdalena I; Bolotin, Eugene; Ticoll, Amy; Cheung, Warren A; Zhang, Xiao Yu Cindy; Dickman, Christopher T D; Fulton, Debra L; Lim, Jonathan S; Schnabl, Jake M; Ramos, Oscar H P; Vasseur-Cognet, Mireille; de Leeuw, Charles N; Simpson, Elizabeth M; Ryffel, Gerhart U; Lam, Eric W-F; Kist, Ralf; Wilson, Miranda S C; Marco-Ferreres, Raquel; Brosens, Jan J; Beccari, Leonardo L; Bovolenta, Paola; Benayoun, Bérénice A; Monteiro, Lara J; Schwenen, Helma D C; Grontved, Lars; Wederell, Elizabeth; Mandrup, Susanne; Veitia, Reiner A; Chakravarthy, Harini; Hoodless, Pamela A; Mancarelli, M Michela; Torbett, Bruce E; Banham, Alison H; Reddy, Sekhar P; Cullum, Rebecca L; Liedtke, Michaela; Tschan, Mario P; Vaz, Michelle; Rizzino, Angie; Zannini, Mariastella; Frietze, Seth; Farnham, Peggy J; Eijkelenboom, Astrid; Brown, Philip J; Laperrière, David; Leprince, Dominique; de Cristofaro, Tiziana; Prince, Kelly L; Putker, Marrit; del Peso, Luis; Camenisch, Gieri; Wenger, Roland H; Mikula, Michal; Rozendaal, Marieke; Mader, Sylvie; Ostrowski, Jerzy; Rhodes, Simon J; Van Rechem, Capucine; Boulay, Gaylor; Olechnowicz, Sam W Z; Breslin, Mary B; Lan, Michael S; Nanan, Kyster K; Wegner, Michael; Hou, Juan; Mullen, Rachel D; Colvin, Stephanie C; Noy, Peter John; Webb, Carol F; Witek, Matthew E; Ferrell, Scott; Daniel, Juliet M; Park, Jason; Waldman, Scott A; Peet, Daniel J; Taggart, Michael; Jayaraman, Padma-Sheela; Karrich, Julien J; Blom, Bianca; Vesuna, Farhad; O'Geen, Henriette; Sun, Yunfu; Gronostajski, Richard M; Woodcroft, Mark W; Hough, Margaret R; Chen, Edwin; Europe-Finner, G Nicholas; Karolczak-Bayatti, Magdalena; Bailey, Jarrod; Hankinson, Oliver; Raman, Venu; LeBrun, David P; Biswal, Shyam; Harvey, Christopher J; DeBruyne, Jason P; Hogenesch, John B; Hevner, Robert F; Héligon, Christophe; Luo, Xin M; Blank, Marissa Cathleen; Millen, Kathleen Joyce; Sharlin, David S; Forrest, Douglas; Dahlman-Wright, Karin; Zhao, Chunyan; Mishima, Yuriko; Sinha, Satrajit; Chakrabarti, Rumela; Portales-Casamar, Elodie; Sladek, Frances M; Bradley, Philip H; Wasserman, Wyeth W.

In: Genome Biology, Vol. 13, No. 3, R24, 29.03.2012.

Research output: Contribution to journalArticle

Harvard

Yusuf, D, Butland, SL, Swanson, MI, Bolotin, E, Ticoll, A, Cheung, WA, Zhang, XYC, Dickman, CTD, Fulton, DL, Lim, JS, Schnabl, JM, Ramos, OHP, Vasseur-Cognet, M, de Leeuw, CN, Simpson, EM, Ryffel, GU, Lam, EW-F, Kist, R, Wilson, MSC, Marco-Ferreres, R, Brosens, JJ, Beccari, LL, Bovolenta, P, Benayoun, BA, Monteiro, LJ, Schwenen, HDC, Grontved, L, Wederell, E, Mandrup, S, Veitia, RA, Chakravarthy, H, Hoodless, PA, Mancarelli, MM, Torbett, BE, Banham, AH, Reddy, SP, Cullum, RL, Liedtke, M, Tschan, MP, Vaz, M, Rizzino, A, Zannini, M, Frietze, S, Farnham, PJ, Eijkelenboom, A, Brown, PJ, Laperrière, D, Leprince, D, de Cristofaro, T, Prince, KL, Putker, M, del Peso, L, Camenisch, G, Wenger, RH, Mikula, M, Rozendaal, M, Mader, S, Ostrowski, J, Rhodes, SJ, Van Rechem, C, Boulay, G, Olechnowicz, SWZ, Breslin, MB, Lan, MS, Nanan, KK, Wegner, M, Hou, J, Mullen, RD, Colvin, SC, Noy, PJ, Webb, CF, Witek, ME, Ferrell, S, Daniel, JM, Park, J, Waldman, SA, Peet, DJ, Taggart, M, Jayaraman, P-S, Karrich, JJ, Blom, B, Vesuna, F, O'Geen, H, Sun, Y, Gronostajski, RM, Woodcroft, MW, Hough, MR, Chen, E, Europe-Finner, GN, Karolczak-Bayatti, M, Bailey, J, Hankinson, O, Raman, V, LeBrun, DP, Biswal, S, Harvey, CJ, DeBruyne, JP, Hogenesch, JB, Hevner, RF, Héligon, C, Luo, XM, Blank, MC, Millen, KJ, Sharlin, DS, Forrest, D, Dahlman-Wright, K, Zhao, C, Mishima, Y, Sinha, S, Chakrabarti, R, Portales-Casamar, E, Sladek, FM, Bradley, PH & Wasserman, WW 2012, 'The transcription factor encyclopedia', Genome Biology, vol. 13, no. 3, R24. https://doi.org/10.1186/gb-2012-13-3-r24

APA

Yusuf, D., Butland, S. L., Swanson, M. I., Bolotin, E., Ticoll, A., Cheung, W. A., Zhang, X. Y. C., Dickman, C. T. D., Fulton, D. L., Lim, J. S., Schnabl, J. M., Ramos, O. H. P., Vasseur-Cognet, M., de Leeuw, C. N., Simpson, E. M., Ryffel, G. U., Lam, E. W-F., Kist, R., Wilson, M. S. C., ... Wasserman, W. W. (2012). The transcription factor encyclopedia. Genome Biology, 13(3), [R24]. https://doi.org/10.1186/gb-2012-13-3-r24

Vancouver

Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA et al. The transcription factor encyclopedia. Genome Biology. 2012 Mar 29;13(3). R24. https://doi.org/10.1186/gb-2012-13-3-r24

Author

Yusuf, Dimas ; Butland, Stefanie L ; Swanson, Magdalena I ; Bolotin, Eugene ; Ticoll, Amy ; Cheung, Warren A ; Zhang, Xiao Yu Cindy ; Dickman, Christopher T D ; Fulton, Debra L ; Lim, Jonathan S ; Schnabl, Jake M ; Ramos, Oscar H P ; Vasseur-Cognet, Mireille ; de Leeuw, Charles N ; Simpson, Elizabeth M ; Ryffel, Gerhart U ; Lam, Eric W-F ; Kist, Ralf ; Wilson, Miranda S C ; Marco-Ferreres, Raquel ; Brosens, Jan J ; Beccari, Leonardo L ; Bovolenta, Paola ; Benayoun, Bérénice A ; Monteiro, Lara J ; Schwenen, Helma D C ; Grontved, Lars ; Wederell, Elizabeth ; Mandrup, Susanne ; Veitia, Reiner A ; Chakravarthy, Harini ; Hoodless, Pamela A ; Mancarelli, M Michela ; Torbett, Bruce E ; Banham, Alison H ; Reddy, Sekhar P ; Cullum, Rebecca L ; Liedtke, Michaela ; Tschan, Mario P ; Vaz, Michelle ; Rizzino, Angie ; Zannini, Mariastella ; Frietze, Seth ; Farnham, Peggy J ; Eijkelenboom, Astrid ; Brown, Philip J ; Laperrière, David ; Leprince, Dominique ; de Cristofaro, Tiziana ; Prince, Kelly L ; Putker, Marrit ; del Peso, Luis ; Camenisch, Gieri ; Wenger, Roland H ; Mikula, Michal ; Rozendaal, Marieke ; Mader, Sylvie ; Ostrowski, Jerzy ; Rhodes, Simon J ; Van Rechem, Capucine ; Boulay, Gaylor ; Olechnowicz, Sam W Z ; Breslin, Mary B ; Lan, Michael S ; Nanan, Kyster K ; Wegner, Michael ; Hou, Juan ; Mullen, Rachel D ; Colvin, Stephanie C ; Noy, Peter John ; Webb, Carol F ; Witek, Matthew E ; Ferrell, Scott ; Daniel, Juliet M ; Park, Jason ; Waldman, Scott A ; Peet, Daniel J ; Taggart, Michael ; Jayaraman, Padma-Sheela ; Karrich, Julien J ; Blom, Bianca ; Vesuna, Farhad ; O'Geen, Henriette ; Sun, Yunfu ; Gronostajski, Richard M ; Woodcroft, Mark W ; Hough, Margaret R ; Chen, Edwin ; Europe-Finner, G Nicholas ; Karolczak-Bayatti, Magdalena ; Bailey, Jarrod ; Hankinson, Oliver ; Raman, Venu ; LeBrun, David P ; Biswal, Shyam ; Harvey, Christopher J ; DeBruyne, Jason P ; Hogenesch, John B ; Hevner, Robert F ; Héligon, Christophe ; Luo, Xin M ; Blank, Marissa Cathleen ; Millen, Kathleen Joyce ; Sharlin, David S ; Forrest, Douglas ; Dahlman-Wright, Karin ; Zhao, Chunyan ; Mishima, Yuriko ; Sinha, Satrajit ; Chakrabarti, Rumela ; Portales-Casamar, Elodie ; Sladek, Frances M ; Bradley, Philip H ; Wasserman, Wyeth W. / The transcription factor encyclopedia. In: Genome Biology. 2012 ; Vol. 13, No. 3.

Bibtex

@article{d549d533cc2246248f5bce5f1f6b0445,
title = "The transcription factor encyclopedia",
abstract = "Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.",
keywords = "Rats, Animals, Transcription Factors, Access to Information, Humans, Databases, Protein, Encyclopedias as Topic, Transcription, Genetic, Mice, Computational Biology, Internet",
author = "Dimas Yusuf and Butland, {Stefanie L} and Swanson, {Magdalena I} and Eugene Bolotin and Amy Ticoll and Cheung, {Warren A} and Zhang, {Xiao Yu Cindy} and Dickman, {Christopher T D} and Fulton, {Debra L} and Lim, {Jonathan S} and Schnabl, {Jake M} and Ramos, {Oscar H P} and Mireille Vasseur-Cognet and {de Leeuw}, {Charles N} and Simpson, {Elizabeth M} and Ryffel, {Gerhart U} and Lam, {Eric W-F} and Ralf Kist and Wilson, {Miranda S C} and Raquel Marco-Ferreres and Brosens, {Jan J} and Beccari, {Leonardo L} and Paola Bovolenta and Benayoun, {B{\'e}r{\'e}nice A} and Monteiro, {Lara J} and Schwenen, {Helma D C} and Lars Grontved and Elizabeth Wederell and Susanne Mandrup and Veitia, {Reiner A} and Harini Chakravarthy and Hoodless, {Pamela A} and Mancarelli, {M Michela} and Torbett, {Bruce E} and Banham, {Alison H} and Reddy, {Sekhar P} and Cullum, {Rebecca L} and Michaela Liedtke and Tschan, {Mario P} and Michelle Vaz and Angie Rizzino and Mariastella Zannini and Seth Frietze and Farnham, {Peggy J} and Astrid Eijkelenboom and Brown, {Philip J} and David Laperri{\`e}re and Dominique Leprince and {de Cristofaro}, Tiziana and Prince, {Kelly L} and Marrit Putker and {del Peso}, Luis and Gieri Camenisch and Wenger, {Roland H} and Michal Mikula and Marieke Rozendaal and Sylvie Mader and Jerzy Ostrowski and Rhodes, {Simon J} and {Van Rechem}, Capucine and Gaylor Boulay and Olechnowicz, {Sam W Z} and Breslin, {Mary B} and Lan, {Michael S} and Nanan, {Kyster K} and Michael Wegner and Juan Hou and Mullen, {Rachel D} and Colvin, {Stephanie C} and Noy, {Peter John} and Webb, {Carol F} and Witek, {Matthew E} and Scott Ferrell and Daniel, {Juliet M} and Jason Park and Waldman, {Scott A} and Peet, {Daniel J} and Michael Taggart and Padma-Sheela Jayaraman and Karrich, {Julien J} and Bianca Blom and Farhad Vesuna and Henriette O'Geen and Yunfu Sun and Gronostajski, {Richard M} and Woodcroft, {Mark W} and Hough, {Margaret R} and Edwin Chen and Europe-Finner, {G Nicholas} and Magdalena Karolczak-Bayatti and Jarrod Bailey and Oliver Hankinson and Venu Raman and LeBrun, {David P} and Shyam Biswal and Harvey, {Christopher J} and DeBruyne, {Jason P} and Hogenesch, {John B} and Hevner, {Robert F} and Christophe H{\'e}ligon and Luo, {Xin M} and Blank, {Marissa Cathleen} and Millen, {Kathleen Joyce} and Sharlin, {David S} and Douglas Forrest and Karin Dahlman-Wright and Chunyan Zhao and Yuriko Mishima and Satrajit Sinha and Rumela Chakrabarti and Elodie Portales-Casamar and Sladek, {Frances M} and Bradley, {Philip H} and Wasserman, {Wyeth W}",
year = "2012",
month = mar,
day = "29",
doi = "10.1186/gb-2012-13-3-r24",
language = "English",
volume = "13",
journal = "Genome Biology",
issn = "1474-7596",
publisher = "BioMed Central",
number = "3",

}

RIS

TY - JOUR

T1 - The transcription factor encyclopedia

AU - Yusuf, Dimas

AU - Butland, Stefanie L

AU - Swanson, Magdalena I

AU - Bolotin, Eugene

AU - Ticoll, Amy

AU - Cheung, Warren A

AU - Zhang, Xiao Yu Cindy

AU - Dickman, Christopher T D

AU - Fulton, Debra L

AU - Lim, Jonathan S

AU - Schnabl, Jake M

AU - Ramos, Oscar H P

AU - Vasseur-Cognet, Mireille

AU - de Leeuw, Charles N

AU - Simpson, Elizabeth M

AU - Ryffel, Gerhart U

AU - Lam, Eric W-F

AU - Kist, Ralf

AU - Wilson, Miranda S C

AU - Marco-Ferreres, Raquel

AU - Brosens, Jan J

AU - Beccari, Leonardo L

AU - Bovolenta, Paola

AU - Benayoun, Bérénice A

AU - Monteiro, Lara J

AU - Schwenen, Helma D C

AU - Grontved, Lars

AU - Wederell, Elizabeth

AU - Mandrup, Susanne

AU - Veitia, Reiner A

AU - Chakravarthy, Harini

AU - Hoodless, Pamela A

AU - Mancarelli, M Michela

AU - Torbett, Bruce E

AU - Banham, Alison H

AU - Reddy, Sekhar P

AU - Cullum, Rebecca L

AU - Liedtke, Michaela

AU - Tschan, Mario P

AU - Vaz, Michelle

AU - Rizzino, Angie

AU - Zannini, Mariastella

AU - Frietze, Seth

AU - Farnham, Peggy J

AU - Eijkelenboom, Astrid

AU - Brown, Philip J

AU - Laperrière, David

AU - Leprince, Dominique

AU - de Cristofaro, Tiziana

AU - Prince, Kelly L

AU - Putker, Marrit

AU - del Peso, Luis

AU - Camenisch, Gieri

AU - Wenger, Roland H

AU - Mikula, Michal

AU - Rozendaal, Marieke

AU - Mader, Sylvie

AU - Ostrowski, Jerzy

AU - Rhodes, Simon J

AU - Van Rechem, Capucine

AU - Boulay, Gaylor

AU - Olechnowicz, Sam W Z

AU - Breslin, Mary B

AU - Lan, Michael S

AU - Nanan, Kyster K

AU - Wegner, Michael

AU - Hou, Juan

AU - Mullen, Rachel D

AU - Colvin, Stephanie C

AU - Noy, Peter John

AU - Webb, Carol F

AU - Witek, Matthew E

AU - Ferrell, Scott

AU - Daniel, Juliet M

AU - Park, Jason

AU - Waldman, Scott A

AU - Peet, Daniel J

AU - Taggart, Michael

AU - Jayaraman, Padma-Sheela

AU - Karrich, Julien J

AU - Blom, Bianca

AU - Vesuna, Farhad

AU - O'Geen, Henriette

AU - Sun, Yunfu

AU - Gronostajski, Richard M

AU - Woodcroft, Mark W

AU - Hough, Margaret R

AU - Chen, Edwin

AU - Europe-Finner, G Nicholas

AU - Karolczak-Bayatti, Magdalena

AU - Bailey, Jarrod

AU - Hankinson, Oliver

AU - Raman, Venu

AU - LeBrun, David P

AU - Biswal, Shyam

AU - Harvey, Christopher J

AU - DeBruyne, Jason P

AU - Hogenesch, John B

AU - Hevner, Robert F

AU - Héligon, Christophe

AU - Luo, Xin M

AU - Blank, Marissa Cathleen

AU - Millen, Kathleen Joyce

AU - Sharlin, David S

AU - Forrest, Douglas

AU - Dahlman-Wright, Karin

AU - Zhao, Chunyan

AU - Mishima, Yuriko

AU - Sinha, Satrajit

AU - Chakrabarti, Rumela

AU - Portales-Casamar, Elodie

AU - Sladek, Frances M

AU - Bradley, Philip H

AU - Wasserman, Wyeth W

PY - 2012/3/29

Y1 - 2012/3/29

N2 - Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

AB - Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

KW - Rats

KW - Animals

KW - Transcription Factors

KW - Access to Information

KW - Humans

KW - Databases, Protein

KW - Encyclopedias as Topic

KW - Transcription, Genetic

KW - Mice

KW - Computational Biology

KW - Internet

U2 - 10.1186/gb-2012-13-3-r24

DO - 10.1186/gb-2012-13-3-r24

M3 - Article

C2 - 22458515

VL - 13

JO - Genome Biology

JF - Genome Biology

SN - 1474-7596

IS - 3

M1 - R24

ER -