Shifting the limits in wheat research and breeding using a fully annotated reference genome

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Shifting the limits in wheat research and breeding using a fully annotated reference genome. / International Wheat Genome Sequencing Consortium (IWGSC) ; Borrill, Philippa.

In: Science, Vol. 361, No. 6403, eaar7191, 17.08.2018.

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International Wheat Genome Sequencing Consortium (IWGSC) ; Borrill, Philippa. / Shifting the limits in wheat research and breeding using a fully annotated reference genome. In: Science. 2018 ; Vol. 361, No. 6403.

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@article{856a8f2f68f64b3fb0f37a47ac3ca2a0,
title = "Shifting the limits in wheat research and breeding using a fully annotated reference genome",
abstract = "An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.",
keywords = "Atlases as Topic, Bread, Breeding, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Genome, Plant, Molecular Sequence Annotation, Multigene Family, Phylogeny, Quantitative Trait Loci, Reference Standards, Transcriptome, Triticum/anatomy & histology",
author = "{International Wheat Genome Sequencing Consortium (IWGSC)} and Rudi Appels and Kellye Eversole and Catherine Feuillet and Beat Keller and Jane Rogers and Nils Stein and Pozniak, {Curtis J} and Nils Stein and Fr{\'e}d{\'e}ric Choulet and Assaf Distelfeld and Kellye Eversole and Jesse Poland and Jane Rogers and Gil Ronen and Sharpe, {Andrew G} and Curtis Pozniak and Gil Ronen and Nils Stein and Omer Barad and Kobi Baruch and Fr{\'e}d{\'e}ric Choulet and Gabriel Keeble-Gagn{\`e}re and Martin Mascher and Sharpe, {Andrew G} and Gil Ben-Zvi and Ambre-Aurore Josselin and Nils Stein and Martin Mascher and Axel Himmelbach and Fr{\'e}d{\'e}ric Choulet and Gabriel Keeble-Gagn{\`e}re and Martin Mascher and Jane Rogers and Fran{\c c}ois Balfourier and Juan Gutierrez-Gonzalez and Matthew Hayden and Ambre-Aurore Josselin and ChuShin Koh and Gary Muehlbauer and Pasam, {Raj K} and Etienne Paux and Pozniak, {Curtis J} and Philippe Rigault and Sharpe, {Andrew G} and Josquin Tibbits and Vijay Tiwari and Fr{\'e}d{\'e}ric Choulet and Gabriel Keeble-Gagn{\`e}re and Martin Mascher and Ambre-Aurore Josselin and Philippa Borrill",
note = "Copyright {\textcopyright} 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.",
year = "2018",
month = aug,
day = "17",
doi = "10.1126/science.aar7191",
language = "English",
volume = "361",
journal = "Science",
issn = "0036-8075",
publisher = "American Association for the Advancement of Science",
number = "6403",

}

RIS

TY - JOUR

T1 - Shifting the limits in wheat research and breeding using a fully annotated reference genome

AU - International Wheat Genome Sequencing Consortium (IWGSC)

AU - Appels, Rudi

AU - Eversole, Kellye

AU - Feuillet, Catherine

AU - Keller, Beat

AU - Rogers, Jane

AU - Stein, Nils

AU - Pozniak, Curtis J

AU - Stein, Nils

AU - Choulet, Frédéric

AU - Distelfeld, Assaf

AU - Eversole, Kellye

AU - Poland, Jesse

AU - Rogers, Jane

AU - Ronen, Gil

AU - Sharpe, Andrew G

AU - Pozniak, Curtis

AU - Ronen, Gil

AU - Stein, Nils

AU - Barad, Omer

AU - Baruch, Kobi

AU - Choulet, Frédéric

AU - Keeble-Gagnère, Gabriel

AU - Mascher, Martin

AU - Sharpe, Andrew G

AU - Ben-Zvi, Gil

AU - Josselin, Ambre-Aurore

AU - Stein, Nils

AU - Mascher, Martin

AU - Himmelbach, Axel

AU - Choulet, Frédéric

AU - Keeble-Gagnère, Gabriel

AU - Mascher, Martin

AU - Rogers, Jane

AU - Balfourier, François

AU - Gutierrez-Gonzalez, Juan

AU - Hayden, Matthew

AU - Josselin, Ambre-Aurore

AU - Koh, ChuShin

AU - Muehlbauer, Gary

AU - Pasam, Raj K

AU - Paux, Etienne

AU - Pozniak, Curtis J

AU - Rigault, Philippe

AU - Sharpe, Andrew G

AU - Tibbits, Josquin

AU - Tiwari, Vijay

AU - Choulet, Frédéric

AU - Keeble-Gagnère, Gabriel

AU - Mascher, Martin

AU - Josselin, Ambre-Aurore

AU - Borrill, Philippa

N1 - Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

PY - 2018/8/17

Y1 - 2018/8/17

N2 - An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.

AB - An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.

KW - Atlases as Topic

KW - Bread

KW - Breeding

KW - Gene Expression Regulation, Developmental

KW - Gene Expression Regulation, Plant

KW - Genome, Plant

KW - Molecular Sequence Annotation

KW - Multigene Family

KW - Phylogeny

KW - Quantitative Trait Loci

KW - Reference Standards

KW - Transcriptome

KW - Triticum/anatomy & histology

U2 - 10.1126/science.aar7191

DO - 10.1126/science.aar7191

M3 - Article

C2 - 30115783

VL - 361

JO - Science

JF - Science

SN - 0036-8075

IS - 6403

M1 - eaar7191

ER -