Browse Publications

  1. 2021
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    Non-elitist evolutionary algorithms excel in fitness landscapes with sparse deceptive regions and dense valleys

    Per Kristian Lehre, 26 Jun 2021, GECCO '21: Proceedings of the 2021 Genetic and Evolutionary Computation Conference Companion. Chicano, F. (ed.). Association for Computing Machinery (ACM), p. 1133–1141 9 p. (Genetic and Evolutionary Computation Conference (GECCO)).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

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    The visual cortex produces gamma band echo in response to broadband visual flicker

    Alexander Zhigalov, & Ole Jensen, 1 Jun 2021, In: PLoS Computational Biology. 17, 6, e1009046.

    Research output: Contribution to journalArticlepeer-review

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    Setting the priority medicinal plants for conservation in Indonesia

    Joana Magos Brehm & Nigel Maxted, Jun 2021, In: Genetic Resources and Crop Evolution. 68, 5, p. 2019-2050 32 p.

    Research output: Contribution to journalArticlepeer-review

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    E-pub ahead of print

    WFS1 protein expression correlates with clinical progression of optic atrophy in patients with Wolfram syndrome

    Malgosia Zatyka, Dewi Astuti, , Renuka Dias, , , , , , & Timothy Barrett, 18 May 2021, (E-pub ahead of print) In: Journal of Medical Genetics.

    Research output: Contribution to journalArticlepeer-review

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    Resurrecting the metabolome: rapid evolution magnifies the metabolomic plasticity to predation in a natural Daphnia population

    Martin Jones, , Mark Viant, & , May 2021, In: Molecular Ecology. 30, 10, p. 2285-2297 13 p.

    Research output: Contribution to journalArticlepeer-review

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    Insights and future directions of potential genetic therapy for Apert syndrome: a systematic review

    Soher Jayash, , & , 22 Feb 2021, (E-pub ahead of print) In: Gene Therapy.

    Research output: Contribution to journalReview articlepeer-review

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  11. 2020
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    A heat-shock inducible system for flexible gene expression in cereals

    Philippa Borrill, & , 1 Dec 2020, In: Plant Methods. 16, 1, p. 137 137.

    Research output: Contribution to journalArticlepeer-review

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    Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment

    Romain Derelle, & John Colbourne, 1 Nov 2020, In: Molecular biology and evolution. 37, 11, p. 3389-3396 8 p.

    Research output: Contribution to journalArticlepeer-review

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    A Bayesian non-parametric mixed-effects model of microbial growth curves

    Peter Lund, & , 26 Oct 2020, In: PLoS Computational Biology. 16, 10, p. e1008366 e1008366.

    Research output: Contribution to journalArticlepeer-review

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    Damage Repair versus Aging in an Individual-Based Model of Biofilms

    Robert Clegg, & Jan-Ulrich Kreft, 13 Oct 2020, In: mSystems. 5, 5, 27 p., e00018-20.

    Research output: Contribution to journalArticlepeer-review

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    The glucosyltransferase activity of C. difficile Toxin B is required for disease pathogenesis

    Sarah Kuehne, & (ed.), 22 Sep 2020, In: PLoS pathogens. 16, 9, 16 p., e1008852.

    Research output: Contribution to journalArticlepeer-review

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    Towards a cancer mission in Horizon Europe: recommendations

    & 21 others, , , , , , , Pamela Kearns, , , , , , , , , , , , , & , 4 Aug 2020, In: Molecular Oncology. 14, 8, p. 1589-1615 27 p.

    Research output: Contribution to journalArticlepeer-review

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    The National Lung Matrix Trial of personalized therapy in lung cancer

    Gary Middleton, Amanda Farley & 7 others, , , , , , & Lucinda Billingham, 30 Jul 2020, In: Nature. 583, 7818, p. 807-812 6 p.

    Research output: Contribution to journalArticlepeer-review

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    Familial hypocalciuric hypercalcemia type 1 and autosomal dominant hypocalcemia type 1: prevalence in a large healthcare population

    Caroline M Gorvin, , , , , , & , 7 May 2020, In: American Journal of Human Genetics. 106, 6, p. 734-747 14 p.

    Research output: Contribution to journalArticlepeer-review

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    Intravascular Follistatin gene delivery improves glycemic control in a mouse model of type 2 diabetes

    Martin Whitham, , , , , , , , , & , Apr 2020, In: FASEB Journal. 34, 4, p. 5697-5714 18 p.

    Research output: Contribution to journalArticlepeer-review

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    Overexpression of BUNDLE SHEATH DEFECTIVE 2 improves the efficiency of photosynthesis and growth in Arabidopsis

    Florian Busch, , , , , , , , , , , , , , , , , & , Apr 2020, In: Plant Journal. 102, 1, p. 129-137 9 p.

    Research output: Contribution to journalArticlepeer-review

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    Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

    Gianmarco Contino & , Mar 2020, In: Nature Genetics. 52, 3, p. 306-319 14 p.

    Research output: Contribution to journalArticlepeer-review

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    The Personalisation of Glioblastoma Treatment Using Whole Exome Sequencing: A Pilot Study

    Christopher McConville, 6 Feb 2020, In: Genes. 11, 2, 18 p., 173.

    Research output: Contribution to journalArticlepeer-review

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    Phylogenetic and pathogenic variability of strains of Ralstonia solanacearum causing moko disease in Colombia

    Robert Jackson & , Feb 2020, In: Plant Pathology. 69, 2, p. 360-369 10 p.

    Research output: Contribution to journalArticlepeer-review

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    Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis

    John Colbourne, 27 Jan 2020, In: PLoS Genetics. 16, 1, 32 p., e1008518.

    Research output: Contribution to journalArticlepeer-review

  33. 2019
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    Image-Based Quantitation of Host Cell–Toxoplasma gondii Interplay Using HRMAn: A Host Response to Microbe Analysis Pipeline

    Jason Mercer & , 23 Nov 2019, Methods in Molecular Biology. Tonkin, C. J. (ed.). Humana Press, Vol. 2071. p. 411-433 23 p. (Methods in Molecular Biology; vol. 2071).

    Research output: Chapter in Book/Report/Conference proceedingChapter

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    A double-edged sword: Aneuploidy is a prevalent strategy in fungal adaptation

    Hung-Ji Tsai, 10 Oct 2019, In: Genes. 10, 10, 787.

    Research output: Contribution to journalReview articlepeer-review

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    A qualitative study on the impact of First Steps- a peer-led educational intervention for people newly diagnosed with Parkinson’s Disease

    Andrew Soundy, , , , , , , , , , & , 10 Oct 2019, In: Behavioral Sciences. 9, 10, 14 p., 107.

    Research output: Contribution to journalArticlepeer-review

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    Nanoscale polarization of the entry fusion complex of vaccinia virus drives efficient fusion

    Jason Mercer, Oct 2019, In: Nature Microbiology. 4, 10, p. 1636-1644 9 p.

    Research output: Contribution to journalLetterpeer-review

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    Environmental and epigenetic regulation of Rider retrotransposons in tomato

    Marco Catoni, , , & , 16 Sep 2019, In: PLoS Genetics. 15, 9, p. 1-28 28 p., e1008370.

    Research output: Contribution to journalArticlepeer-review

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    A thematic synthesis considering the factors which influence multiple sclerosis related fatigue during physical activity

    Andrew Soundy, 1 Jul 2019, In: Behavioral Sciences. 9, 7, 23 p., 70.

    Research output: Contribution to journalArticlepeer-review

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    Enterococcus faecium genome dynamics during long-term asymptomatic patient gut colonization

    Willem van Schaik, 1 Jul 2019, In: Microbial Genomics. 5, 7, 000277.

    Research output: Contribution to journalArticlepeer-review

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    E-pub ahead of print

    Structural investigations of protein-lipid complexes using neutron scattering

    Tim Knowles, & , 20 Jun 2019, (E-pub ahead of print) In: Methods in molecular biology. 2003, p. 201-251 51 p.

    Research output: Contribution to journalArticlepeer-review

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    Using flow cytometry to detect and measure intracellular thiol redox status in viable t cells from heterogeneous populations

    Alex Wadley, , , & , 1 May 2019, (E-pub ahead of print) Using Flow Cytometry to Detect and Measure Intracellular Thiol Redox Status in Viable T Cells from Heterogeneous Populations.. Vol. 1990. p. 53-70 18 p. (Methods in Molecular Biology; vol. 1990).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

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    3DCellAtlas Meristem: a tool for the global cellular annotation of shoot apical meristems

    Tom Montenegro-Johnson, , , , & George Bassel, 4 Apr 2019, In: Plant Methods. 15, 1, 9 p., 33.

    Research output: Contribution to journalArticlepeer-review

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    Biallelic Variants in TONSL Cause SPONASTRIME Dysplasia and a Spectrum of Skeletal Dysplasia Phenotypes

    John Reynolds, Martin Higgs & 39 others, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Grant Stewart, , & , 7 Mar 2019, In: American Journal of Human Genetics. 104, 3, p. 422-438 17 p.

    Research output: Contribution to journalArticlepeer-review

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    RNA modifications in gene expression control

    Matthias Soller & , 2 Mar 2019, In: Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. 1862, 3, p. 219-221 3 p.

    Research output: Contribution to journalEditorial

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    Vaccinia virus hijacks EGFR signalling to enhance virus spread through rapid and directed infected cell motility

    Jason Mercer, Feb 2019, In: Nature Microbiology. 4, 2, p. 216-225 10 p.

    Research output: Contribution to journalLetterpeer-review

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    Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer

    Deena M A Gendoo, , , , , , , , , , , , , , , , , & , 10 Jan 2019, In: PLoS Computational Biology. 15, 1, e1006596.

    Research output: Contribution to journalArticlepeer-review

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    Cabazitaxel liposomes with aptamer modification enhance tumor-targeting efficacy in nude mice

    Jason Zhang & , Jan 2019, In: Molecular Medicine Reports. 19, 1, p. 490-498 9 p.

    Research output: Contribution to journalArticlepeer-review

  54. 2018
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    The lasting impact of the 2013 beveridge poster award

    Patrick Moynihan, Sep 2018, In: Canadian Journal of Microbiology. 64, 9, p. 645-645 1 p.

    Research output: Contribution to journalLetterpeer-review

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    Microglia activation in Niemann-Pick disease, type C1 is amendable to therapeutic intervention

    Rebecca Drummond, , , , , , , , , & , 15 Jun 2018, In: Human Molecular Genetics. 27, 12, p. 2076-2089 14 p.

    Research output: Contribution to journalArticlepeer-review

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    Development of national crop wild relative conservation strategies in European countries

    Nigel Maxted, Shelagh Kell, Joana Magos Brehm & , 1 Jun 2018, In: Genetic Resources and Crop Evolution. 65, 5, p. 1385-1403 19 p.

    Research output: Contribution to journalArticlepeer-review

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    Characterization of the pathogenicity of strains of Pseudomonas syringae towards cherry and plum

    Robert Jackson & , Jun 2018, In: Plant Pathology. 67, 5, p. 1177-1193 17 p.

    Research output: Contribution to journalArticlepeer-review

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    Proteotype profiling unmasks a viral signalling network essential for poxvirus assembly and transcriptional competence

    Jason Mercer & , May 2018, In: Nature Microbiology. 3, 5, p. 588-599 12 p.

    Research output: Contribution to journalArticlepeer-review

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    The vaccination model in psychoneuroimmunology research: A review

    Anna Whittaker, 29 Apr 2018, Psychoneuroimmunology: Methods and Protocols. Yan, Q. (ed.). Humana Press, p. 309-326 18 p. (Methods in Molecular Biology; vol. 1781).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

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    Across-subjects classification of stimulus modality from human MEG high frequency activity

    Simon Hanslmayr & , 12 Mar 2018, In: PLoS Computational Biology. 14, 3, e1005938.

    Research output: Contribution to journalArticlepeer-review

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    Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes

    Luisa Orsini, James Brown, , , Shan He, , , , , , , , John Colbourne, , Jouni Kvist, , & , 1 Feb 2018, In: Molecular Ecology. 27, 4, p. 886-897 12 p.

    Research output: Contribution to journalArticlepeer-review

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    Response to Giem

    1 Feb 2018, In: American Journal of Human Genetics. 102, 2, p. 331 1 p.

    Research output: Contribution to journalLetter

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    Determination of the 3D genome organization of bacteria using Hi-C

    James Haycocks, Lisa Lamberte, David Grainger & , 2018, Bacterial Chromatin: Methods and Protocols. Dame, R. T. (ed.). New York, NY: Humana Press, p. 3-18 16 p. (Methods in Molecular Biology; vol. 1837).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  66. 2017
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    Novel methods for microglia segmentation, feature extraction, and classification

    Jinming Duan, , , & , 7 Dec 2017, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 6, p. 1366-1377 12 p.

    Research output: Contribution to journalArticlepeer-review

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    Redox control of aphid resistance through altered cell wall composition and nutritional quality

    Christine Foyer, 1 Sep 2017, In: PLANT PHYSIOLOGY. 175, 1, p. 259-271 13 p.

    Research output: Contribution to journalArticlepeer-review

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    MRE11 stability is regulated by CK2-dependent interaction with R2TP complex

    Stephen Smerdon, & , 24 Aug 2017, In: Oncogene. 36, 34, p. 4943-4950 8 p.

    Research output: Contribution to journalArticlepeer-review

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    Introduction: T cell trafficking in inflammation and immunity

    Myriam Chimen, Bonita Apta & Helen McGettrick, 28 Mar 2017, (E-pub ahead of print) T-Cell Trafficking: Methods and Protocols. Springer, Vol. 1591. p. 73-84 12 p. (Methods in Molecular Biology (MIMB)).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

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    Active module identification in intracellular networks using a memetic algorithm with a new binary decoding scheme

    Shan He, 14 Mar 2017, In: BMC Genomics. 18, S2, 9 p., 209.

    Research output: Contribution to journalArticlepeer-review

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    Correction: Corrigendum: Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance

    Feb 2017, In: Nature Genetics. 49, 2, 1 p., 317 .

    Research output: Contribution to journalComment/debatepeer-review

  73. 2016
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    Next-generation biology: Sequencing and data analysis approaches for non-model organisms

    Lisandra Zepeda Zepeda Mendoza, , & , 1 Dec 2016, In: Marine Genomics. 30, p. 3-13 11 p.

    Research output: Contribution to journalArticlepeer-review

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    Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance

    Gianmarco Contino & Olga Tucker, Oct 2016, In: Nature Genetics. 48, 10, p. 1131-1141 11 p.

    Research output: Contribution to journalArticlepeer-review

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    OGS2: Genome re-annotation of the jewel wasp Nasonia vitripennis

    John Colbourne, 25 Aug 2016, In: BMC Genomics. 17, 1, 678.

    Research output: Contribution to journalArticlepeer-review

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    Inactivating mutations in GNA13 and RHOA in Burkitt's lymphoma and diffuse large B-cell lymphoma: a tumor suppressor function for the Gα13/RhoA axis in B cells

    Rebecca Drummond, , , , , , , , , & , 21 Jul 2016, In: Oncogene. 35, 29, p. 3771-3780 10 p.

    Research output: Contribution to journalArticlepeer-review

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    Immobilized WNT proteins act as a stem cell niche for tissue engineering

    Alicia El Haj & , 12 Jul 2016, In: Stem Cell Reports. 7, 1, p. 126-137 12 p.

    Research output: Contribution to journalArticlepeer-review

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    BMP and Hedgehog Regulate Distinct AGM Hematopoietic Stem Cells Ex Vivo

    Rui Monteiro, & , 8 Mar 2016, In: Stem Cell Reports. 6, 3, p. 383-395 13 p.

    Research output: Contribution to journalArticlepeer-review

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    Response to Hellenthal et al.

    4 Feb 2016, In: American Journal of Human Genetics. 98, 2, p. 398 1 p.

    Research output: Contribution to journalLetter

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    Testing of Cis-regulatory elements by targeted transgene integration in Zebrafish using PhiC31 integrase

    Yavor Hadzhiev, , & Ferenc Müller, 1 Jan 2016, Methods in Molecular Biology. Humana Press, p. 81-91 11 p. (Methods in Molecular Biology; vol. 1451).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  83. 2015
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    Rapid, automated detection of stem canker symptoms in woody perennials using artificial neural network analysis

    Robert Jackson & , 24 Dec 2015, In: Plant Methods. 11, 9 p., 57.

    Research output: Contribution to journalArticlepeer-review

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    CARD9-dependent neutrophil recruitment protects against fungal invasion of the central nervous system

    Rebecca Drummond & 6 others, , , , , & , 17 Dec 2015, In: PLoS pathogens. 11, 12, 32 p., e1005293.

    Research output: Contribution to journalArticlepeer-review

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    The behavioral characteristics of Sotos syndrome

    Krupa Sheth, Joanna Moss, , Chris Stinton, & Chris Oliver, Dec 2015, In: American Journal of Medical Genetics. Part A. 167, 12, p. 2945-2956 12 p.

    Research output: Contribution to journalArticlepeer-review

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    The evolution of bat nucleic acid-sensing Toll-like receptors

    Lisandra Zepeda Zepeda Mendoza, , , , & , Dec 2015, In: Molecular Ecology. 24, 23, p. 5899-5909 11 p.

    Research output: Contribution to journalArticlepeer-review

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    Behavioral characteristics associated with 19p13.2 microdeletions

    Alice Welham, , Joanna Moss, , Krupa Sheth, Lucy Wilde, & Chris Oliver, 1 Oct 2015, In: American Journal of Medical Genetics. Part A. 167, 10, p. 2334-2343 10 p.

    Research output: Contribution to journalArticlepeer-review

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    A comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease

    & 131 others, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , & , Oct 2015, In: Nature Genetics. 47, 10, p. 1121-1130 12 p.

    Research output: Contribution to journalArticlepeer-review

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    Vaccinia Virus Infection Requires Maturation of Macropinosomes

    Jason Mercer, 1 Aug 2015, In: Traffic. 16, 8, p. 814-831 18 p.

    Research output: Contribution to journalArticlepeer-review

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    Establishing the UK DNA Bank for motor neuron disease (MND)

    Karen Morrison, & , 14 Jul 2015, In: BMC Genetics. 16, 1, 84.

    Research output: Contribution to journalArticlepeer-review

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    Protocol: Genetic transformation of the fern ceratopteris richardii through microparticle bombardment

    Andrew Plackett, & , 3 Jul 2015, In: Plant Methods. 11, 1, 10 p., 37.

    Research output: Contribution to journalArticlepeer-review

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    A national survey of Rett syndrome: Age, clinical characteristics, current abilities, and health

    Chris Oliver & , 1 Jul 2015, In: American Journal of Medical Genetics. Part A. 167, 7, p. 1493-1500 8 p.

    Research output: Contribution to journalArticlepeer-review

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    Expression patterns of C- and N-metabolism related genes in wheat are changed during senescence under elevated CO2 in dry-land agriculture

    Michael Tausz, , , , & , 1 Jul 2015, In: Trends in Plant Science. 236, p. 239-249 11 p.

    Research output: Contribution to journalArticlepeer-review

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    Soilwater Conductivity Analysis to Date and Locate Clandestine Graves of Homicide Victims

    Nigel Cassidy, Jul 2015, In: Journal of Forensic Sciences. 60, 4, p. 1052-1060 9 p.

    Research output: Contribution to journalArticlepeer-review

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    Dual inhibition of REV-ERBβ and autophagy as a novel pharmacological approach to induce cytotoxicity in cancer cells

    Giovanni Bottegoni, , , , , , , & , 14 May 2015, In: Oncogene. 34, 20, p. 2597-2608 12 p.

    Research output: Contribution to journalArticlepeer-review

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    Pcf11 orchestrates transcription termination pathways in yeast

    Pawel Grzechnik, & , 15 Apr 2015, In: Genes & Development. 29, 8, p. 849-861 13 p.

    Research output: Contribution to journalArticlepeer-review

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    Single-molecule fluorescence microscopy for the analysis of fast receptor dynamics

    Davide Calebiro, 2015, In: Methods in molecular biology. 1335, p. 53-66 14 p.

    Research output: Contribution to journalArticlepeer-review

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    Trafficking and Function of GPCRs in the Endosomal Compartment

    Davide Calebiro, , & , 2015, In: Methods in molecular biology. 1234, p. 197-211 15 p.

    Research output: Contribution to journalArticlepeer-review

  102. 2014
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    Simultaneous analysis of large-scale RNAi screens for pathogen entry

    & 22 others, , Jason Mercer, , , , , , , , , , , , , , , , , , , & , 22 Dec 2014, In: BMC Genomics. 15, 18 p., 1162.

    Research output: Contribution to journalArticlepeer-review

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    Establishing a large prospective clinical cohort in people with head and neck cancer as a biomedical resource: Head and neck 5000

    & 77 others, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , & , 17 Dec 2014, In: BMC Cancer. 14, 1, p. 973 973.

    Research output: Contribution to journalArticlepeer-review

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    Different waves and directions of Neolithic migrations in the Armenian Highland

    30 Nov 2014, In: Investigative Genetics. 5, 1, 11 p., 15.

    Research output: Contribution to journalArticlepeer-review

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    De novo design of peptide scaffolds as novel preorganized ligands for metal-ion coordination

    Aimee Gamble & Anna Peacock, 20 Aug 2014, In: Methods in molecular biology. 1216, p. 211-231 21 p.

    Research output: Contribution to journalArticlepeer-review

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    Developmental hematopoiesis: Ontogeny, genetic programming and conservation

    Rui Monteiro, & , Aug 2014, In: Experimental Hematology. 42, 8, p. 669-683 15 p.

    Research output: Contribution to journalReview articlepeer-review

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    Evidence that nematodes may vector the soft rot-causing enterobacterial phytopathogens

    Robert Jackson & , Aug 2014, In: Plant Pathology. 63, 4, p. 747-757 11 p.

    Research output: Contribution to journalArticlepeer-review

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