Proposed reporting requirements for the description of NMR-based metabolomics experiments

DV Rubtsov, H Jenkins, Christian Ludwig, John Easton, Mark Viant, Ulrich Gunther, JL Griffin, N Hardy

Research output: Contribution to journalArticlepeer-review

46 Citations (Scopus)

Abstract

The amount of data generated by NMR-based metabolomic experiments is increasing rapidly. Furthermore, diverse techniques increase the need for informative and comprehensive meta-data. These factors present a challenge in the dissemination, interpretation, reviewing and comparison of experimental results using this technology. Thus, there is a strong case for unification and standardisation of the data representation for both academia and industry. Here, a systems analysis of ail NMR-based metabolomics experiment is presented in order to reveal the reporting requirements. An in-depth analysis of the NMR component of a metabolomics experiment has been produced, and a first round of data standard development completed. This has focussed on both one- and two-dimensional H-1 NMR experiments, but is also applicable to higher dimensions and other nuclei. We also report the modelling of this schema using Unified Modelling Language (UML), and have extended this to a proof-of-concept implementation of the standard as an XML schema.
Original languageEnglish
Pages (from-to)223-229
Number of pages7
JournalMetabolomics
Volume3
Issue number3
Early online date1 Sept 2007
DOIs
Publication statusPublished - 19 Sept 2007

Keywords

  • reporting requirements
  • data model
  • NMR
  • metabolomics
  • standardisation

Fingerprint

Dive into the research topics of 'Proposed reporting requirements for the description of NMR-based metabolomics experiments'. Together they form a unique fingerprint.

Cite this