MorphoGraphX: A platform for quantifying morphogenesis in 4D

Pierre Barbier de Reuille; Anne-Lise Routier-Kierzkowska; Daniel Kierzkowski; George W Bassel; Thierry Schüpbach; Gerardo Tauriello; Namrata Bajpai; Sören Strauss; Alain Weber; Annamaria Kiss; Agata Burian; Hugo Hofhuis; Aleksandra Sapala; Marcin Lipowczan; Maria B Heimlicher; Sarah Robinson; Emmanuelle M Bayer; Konrad Basler; Petros Koumoutsakos; Adrienne Hk Roeder; Tinri Aegerter-Wilmsen; Naomi Nakayama; Miltos Tsiantis; Angela Hay; Dorota Kwiatkowska; Ioannis Xenarios; Cris Kuhlemeier; Richard S Smith

doi:10.7554/eLife.05864

MorphoGraphX: A platform for quantifying morphogenesis in 4D

Pierre Barbier de Reuille, Anne-Lise Routier-Kierzkowska, Daniel Kierzkowski, George W Bassel, Thierry Schüpbach, Gerardo Tauriello, Namrata Bajpai, Sören Strauss, Alain Weber, Annamaria Kiss, Agata Burian, Hugo Hofhuis, Aleksandra Sapala, Marcin Lipowczan, Maria B Heimlicher, Sarah Robinson, Emmanuelle M Bayer, Konrad Basler, Petros Koumoutsakos, Adrienne Hk RoederTinri Aegerter-Wilmsen, Naomi Nakayama, Miltos Tsiantis, Angela Hay, Dorota Kwiatkowska, Ioannis Xenarios, Cris Kuhlemeier, Richard S Smith

Biosciences

Research output: Contribution to journal › Article › peer-review

205 Citations (Scopus)

Abstract

Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX (.

Original language	English
Article number	e05864
Journal	eLife
Volume	4
DOIs	https://doi.org/10.7554/eLife.05864
Publication status	Published - 2015

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10.7554/eLife.05864Licence: Creative Commons: Attribution (CC BY)

Cell-type-specific environmental signal integration networks controlling a binary developmental switch during the life cycle of plants
Bassel, G.
Biotechnology & Biological Sciences Research Council
28/04/14 → 27/04/17
Project: Research Councils

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Barbier de Reuille, P., Routier-Kierzkowska, A-L., Kierzkowski, D., Bassel, G. W., Schüpbach, T., Tauriello, G., Bajpai, N., Strauss, S., Weber, A., Kiss, A., Burian, A., Hofhuis, H., Sapala, A., Lipowczan, M., Heimlicher, M. B., Robinson, S., Bayer, E. M., Basler, K., Koumoutsakos, P., ... Smith, R. S. (2015). MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife, 4, Article e05864. https://doi.org/10.7554/eLife.05864

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abstract = "Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX (.",

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Barbier de Reuille, P, Routier-Kierzkowska, A-L, Kierzkowski, D, Bassel, GW, Schüpbach, T, Tauriello, G, Bajpai, N, Strauss, S, Weber, A, Kiss, A, Burian, A, Hofhuis, H, Sapala, A, Lipowczan, M, Heimlicher, MB, Robinson, S, Bayer, EM, Basler, K, Koumoutsakos, P, Roeder, AH, Aegerter-Wilmsen, T, Nakayama, N, Tsiantis, M, Hay, A, Kwiatkowska, D, Xenarios, I, Kuhlemeier, C & Smith, RS 2015, 'MorphoGraphX: A platform for quantifying morphogenesis in 4D', eLife, vol. 4, e05864. https://doi.org/10.7554/eLife.05864

TY - JOUR

T1 - MorphoGraphX

T2 - A platform for quantifying morphogenesis in 4D

AU - Barbier de Reuille, Pierre

AU - Routier-Kierzkowska, Anne-Lise

AU - Kierzkowski, Daniel

AU - Bassel, George W

AU - Schüpbach, Thierry

AU - Tauriello, Gerardo

AU - Bajpai, Namrata

AU - Strauss, Sören

AU - Weber, Alain

AU - Kiss, Annamaria

AU - Burian, Agata

AU - Hofhuis, Hugo

AU - Sapala, Aleksandra

AU - Lipowczan, Marcin

AU - Heimlicher, Maria B

AU - Robinson, Sarah

AU - Bayer, Emmanuelle M

AU - Basler, Konrad

AU - Koumoutsakos, Petros

AU - Roeder, Adrienne Hk

AU - Aegerter-Wilmsen, Tinri

AU - Nakayama, Naomi

AU - Tsiantis, Miltos

AU - Hay, Angela

AU - Kwiatkowska, Dorota

AU - Xenarios, Ioannis

AU - Kuhlemeier, Cris

AU - Smith, Richard S

PY - 2015

Y1 - 2015

N2 - Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX (.

AB - Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX (.

U2 - 10.7554/eLife.05864

DO - 10.7554/eLife.05864

M3 - Article

C2 - 25946108

SN - 2050-084X

VL - 4

JO - eLife

JF - eLife

M1 - e05864

ER -

MorphoGraphX: A platform for quantifying morphogenesis in 4D

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Cell-type-specific environmental signal integration networks controlling a binary developmental switch during the life cycle of plants

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