Modeling extracellular fields for a three-dimensional network of cells using NEURON

Research output: Contribution to journalArticle

Authors

Colleges, School and Institutes

External organisations

  • Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, Maharashtra, India. Electronic address: shailesh.a@iitb.ac.in.
  • Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, Maharashtra, India. Electronic address: rmanch@iitb.ac.in.

Abstract

Background: Computational modeling of biological cells usually ignores their extracellular fields, assuming them to be inconsequential. Though such an assumption might be justified in certain cases, it is debatable for networks of tightly packed cells, such as in the central nervous system and the syncytial tissues of cardiac and smooth muscle.
New Method: In the present work, we demonstrate a technique to couple the extracellular fields of individual cells within the NEURON simulation environment. The existing features of the simulator are extended by explicitly defining current balance equations, resulting in the coupling of the extracellular fields of adjacent cells.
Results: With this technique, we achieved continuity of extracellular space for a network model, thereby allowing the exploration of extracellular interactions computationally. Using a three-dimensional network model, passive and active electrical properties were evaluated under varying levels of extracellular volumes. Simultaneous intracellular and extracellular recordings for synaptic and action potentials were analyzed, and the potential of ephaptic transmission towards functional coupling of cells was explored.
Comparison with Existing Method(s): We have implemented a true bi-domain representation of a network of cells, with the extracellular domain being continuous throughout the entire model. This has hitherto not been achieved using NEURON, or other compartmental modeling platforms.
Conclusions: We have demonstrated the coupling of the extracellular field of every cell in a three-dimensional model to obtain a continuous uniform extracellular space. This technique provides a framework for the investigation of interactions in tightly packed networks of cells via their extracellular fields.

Details

Original languageEnglish
Article numberNSM_7781
Pages (from-to)27-38
Number of pages12
JournalJournal of Neuroscience Methods
Volume290
Early online date10 Jul 2017
Publication statusPublished - 1 Oct 2017

Keywords

  • Electrical Syncytium, Compartmental Modeling, NEURON, Extracellular Recording, Ephaptic Coupling, Extracellular Space