HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids

Aziz Mithani; Eric J Belfield; Carly Brown; Caifu Jiang; Lindsey J Leach; Nicholas P Harberd

doi:10.1186/1471-2164-14-653

HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids

Aziz Mithani, Eric J Belfield, Carly Brown, Caifu Jiang, Lindsey J Leach, Nicholas P Harberd

Biosciences

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Abstract

The analysis of polyploid genomes is problematic because homeologous subgenome sequences are closely related. This relatedness makes it difficult to assign individual sequences to the specific subgenome from which they are derived, and hinders the development of polyploid whole genome assemblies.

Original language	English
Article number	653
Journal	BMC Genomics
Volume	14
Issue number	1
DOIs	https://doi.org/10.1186/1471-2164-14-653
Publication status	Published - 24 Sept 2013

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Mithani_et_al_HANDS_BMC_Genomics_2013
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Checked July 2015
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title = "HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids",

abstract = "The analysis of polyploid genomes is problematic because homeologous subgenome sequences are closely related. This relatedness makes it difficult to assign individual sequences to the specific subgenome from which they are derived, and hinders the development of polyploid whole genome assemblies.",

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AU - Leach, Lindsey J

AU - Harberd, Nicholas P

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HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids

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