James Brown

(Former)

Publications

  1. 2021
  2. Published
  3. 2020
  4. E-pub ahead of print
  5. Published
  6. 2019
  7. E-pub ahead of print

    Review of and recommendations for monitoring contaminants and their effects in the San Francisco Bay−Delta

    John Colbourne, James Brown, 9 Dec 2019, (E-pub ahead of print) In: San Francisco Estuary and Watershed Science. 17, 4, 2.

    Research output: Contribution to journalArticlepeer-review

  8. 2018
  9. Published

    Pattern of DNA methylation in Daphnia: evolutionary perspective

    Jouni Kvist, James Brown, John Colbourne, 1 Aug 2018, In: Genome Biology and Evolution. 10, 8, p. 1988-2007

    Research output: Contribution to journalArticlepeer-review

  10. E-pub ahead of print

    An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys

    James Brown, 29 Jun 2018, (E-pub ahead of print) In: RNA. p. 1255-1265 11 p.

    Research output: Contribution to journalArticlepeer-review

  11. Published
  12. Published
  13. 2017
  14. Published

    Age-related gene expression in luminal epithelial cells is driven by a microenvironment made from myoepithelial cells

    James Brown, 9 Oct 2017, In: Aging. 9, 10, p. 2026-2051 26 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Erratum: daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

    Luisa Orsini, James Brown, John Colbourne, Jouni Kvist & 3 others, , 31 Jan 2017, In: Scientific Data. 4, 1 p., 170006.

    Research output: Contribution to journalComment/debatepeer-review

  16. 2016
  17. Published

    Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome

    James Brown, 28 Nov 2016, In: Nature Microbiology. 2, 8 p., 16221.

    Research output: Contribution to journalArticlepeer-review

  18. Published
  19. 2015
  20. Published

    Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice

    James Brown, 9 Nov 2015, In: Scientific Reports. 5, 9 p., 16247.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

    James Brown, Nov 2015, In: Genome Research. 25, 11, p. 1692-1702 11 p.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility

    & 32 others, & James Brown, 29 Jan 2015, In: Nature Communications. 6, 16 p., 5897.

    Research output: Contribution to journalArticlepeer-review

  23. 2014
  24. Published

    Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

    James Brown, 2 Oct 2014, In: PLoS ONE. 9, 10, p. 1-11 11 p., e109443.

    Research output: Contribution to journalArticlepeer-review

  25. Published

    Diversity and dynamics of the Drosophila transcriptome

    James Brown & 21 others, , 28 Aug 2014, In: Nature. 512, 7515, p. 393-399 7 p.

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Comparative analysis of the transcriptome across distant species

    James Brown & 30 others, , 27 Aug 2014, In: Nature. 512, 7515, p. 445-448 4 p.

    Research output: Contribution to journalLetterpeer-review

  27. Published

    Comparative validation of the D. melanogaster modENCODE transcriptome annotation

    James Brown & 30 others, , 1 Jul 2014, In: Genome Research. 24, 7, p. 1209-1223 15 p.

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Genome-guided transcript assembly by integrative analysis of RNA sequence data

    James Brown, Apr 2014, In: Nature Biotechnology. 32, 4, p. 341-346 6 p.

    Research output: Contribution to journalArticlepeer-review