Bioinformatics, 1367-4803

Journal

Publications

  1. 1993
  2. Published

    Notes on the implementation of the mass-radius method of fractal dimension estimation

    Gabriel Landini & John Rippin, 1 Jan 1993, In: Bioinformatics. 9, 5, p. 547-550 4 p.

    Research output: Contribution to journalArticlepeer-review

  3. 2001
  4. Published

    The utility of different representations of protein sequence for predicting functional class

    Andreas Karwath, 2001, In: Bioinformatics. 17, 5, p. 445-454 10 p.

    Research output: Contribution to journalArticlepeer-review

  5. 2002
  6. Published

    QTL Express: mapping quantitative trait loci in simple and complex pedigrees

    Mike Kearsey, 1 Feb 2002, In: Bioinformatics. 18, 2, p. 339-340 2 p.

    Research output: Contribution to journalArticle

  7. 2004
  8. Published

    Modelling T-cell Activation Using Gene Expression Profiling and State Space Models

    Francesco Falciani, 12 Feb 2004, In: Bioinformatics. 20, 9, p. 1361-1372 12 p.

    Research output: Contribution to journalArticle

  9. 2005
  10. Published

    A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

    Francesco Falciani, 1 Feb 2005, In: Bioinformatics. 21, 3, p. 349-356 8 p.

    Research output: Contribution to journalArticle

  11. Published

    CRAVE: a database, middleware and visualization system for phenotype ontologies

    Georgios Gkoutos, 1 Apr 2005, In: Bioinformatics. 21, 7, p. 1257-1262 6 p.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    EMPReSS: European mouse phenotyping resource for standardized screens

    Georgios Gkoutos, 1 Jun 2005, In: Bioinformatics. 21, 12, p. 2930-2931 2 p.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Biomarker discovery in microarray gene expression data with Gaussian processes

    Francesco Falciani, 1 Aug 2005, In: Bioinformatics. 21, 16, p. 3385-3393 9 p.

    Research output: Contribution to journalArticle

  14. Published

    SIMAP--the similarity matrix of proteins

    Roland Arnold, 1 Sep 2005, In: Bioinformatics. 21, Supplement 2, p. ii42-ii46

    Research output: Contribution to journalArticlepeer-review

  15. Published

    GALGO: an R package for multivariate variable selection using genetic algorithms

    Francesco Falciani, 22 Nov 2005, In: Bioinformatics. 22, 9, p. 1154-1156 3 p.

    Research output: Contribution to journalArticle

  16. 2006
  17. Published

    Functional bioinformatics for Arabidopsis thaliana

    Andreas Karwath, 2006, In: Bioinformatics. 22, 9, p. 1130-1136 7 p.

    Research output: Contribution to journalArticlepeer-review

  18. 2007
  19. Published

    Predicting transcription factor affinities to DNA from a biophysical model

    Aditi Kanhere, 2007, In: Bioinformatics. 23, 2, p. 134-41 8 p.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Gepard: a rapid and sensitive tool for creating dotplots on genome scale

    Roland Arnold, 15 Apr 2007, In: Bioinformatics. 23, 8, p. 1026-8 3 p.

    Research output: Contribution to journalArticlepeer-review

  21. 2008
  22. Published

    A machine-learning approach to combined evidence validation of genome assemblies

    John Colbourne, 15 Mar 2008, In: Bioinformatics. 24, 6, p. 744-750

    Research output: Contribution to journalArticlepeer-review

  23. Published
  24. 2011
  25. Published

    A common layer of interoperability for biomedical ontologies based on OWL EL

    Georgios Gkoutos, 1 Apr 2011, In: Bioinformatics. 27, 7, p. 1001-1008 8 p.

    Research output: Contribution to journalArticlepeer-review

  26. Published

    B2G-FAR, a species-centered GO annotation repository

    Roland Arnold, 1 Apr 2011, In: Bioinformatics. 27, 7, p. 919-24 6 p.

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets

    Warwick Dunn, 15 Apr 2011, In: Bioinformatics. 27, 8, p. 1108-12 5 p.

    Research output: Contribution to journalArticlepeer-review

  28. Published

    PIDO: the primary immunodeficiency disease ontology

    Georgios Gkoutos, 1 Nov 2011, In: Bioinformatics. 27, 22, p. 3193-3199 7 p.

    Research output: Contribution to journalArticlepeer-review

  29. 2012
  30. Published

    StochSens—matlab package for sensitivity analysis of stochastic chemical systems

    Justina Zurauskiene, 2012, In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  31. Published

    An infrastructure for ontology-based information systems in biomedicine: RICORDO case study

    Georgios Gkoutos, 1 Feb 2012, In: Bioinformatics. 28, 3, p. 448-450 3 p.

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology

    Georgios Gkoutos, 1 Jul 2012, In: Bioinformatics. 28, 13, p. 1783-1789 7 p.

    Research output: Contribution to journalArticlepeer-review

  33. Published

    Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

    Georgios Gkoutos, 1 Aug 2012, In: Bioinformatics. 28, 16, p. 2169-2175 7 p.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    MaConDa: a publicly accessible mass spectrometry contaminants database

    Ralf Weber, Eva Li, Shan He & Mark Viant, 1 Nov 2012, In: Bioinformatics. 28, 21, p. 2856-7 2 p.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    GREVE: Genomic Recurrent Event ViEwer to assist the identification of patterns across individual cancer samples

    Jean-Baptiste Cazier, 15 Nov 2012, In: Bioinformatics. 28, 22, p. 2981-2 2 p.

    Research output: Contribution to journalArticlepeer-review

  36. 2013
  37. Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure

    Csilla Varnai, 1 Mar 2013, In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Classification of mislabelled microarrays using robust sparse logistic regression

    Ata Kaban, 1 Apr 2013, In: Bioinformatics. 29, 7, p. 870-877

    Research output: Contribution to journalArticlepeer-review

  39. 2014
  40. Published

    HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries

    Ralf Weber, Will Allwood, Warwick Dunn, Shan He & Mark Viant, 15 Feb 2014, In: Bioinformatics. 30, 4, p. 581-583

    Research output: Contribution to journalArticlepeer-review

  41. Published

    Derivative processes for modelling metabolic fluxes

    Justina Zurauskiene, 26 Feb 2014, In: Bioinformatics. 30, 13, p. 1892-1898 7 p.

    Research output: Contribution to journalArticlepeer-review

  42. Published

    Mouse model phenotypes provide information about human drug targets

    Georgios Gkoutos, 1 Mar 2014, In: Bioinformatics. 30, 5, p. 719-725 7 p.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli

    Roland Arnold, 13 Oct 2014, In: Bioinformatics. 31, 3, p. 306-310 5 p.

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Poretools: a toolkit for analyzing nanopore sequence data

    Nicholas Loman, 1 Dec 2014, In: Bioinformatics. 30, 23, p. 3399-401 3 p.

    Research output: Contribution to journalArticlepeer-review

  45. 2015
  46. Published
  47. 2016
  48. Published
  49. Published

    contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples

    Zewei Luo, 1 Mar 2016, In: Bioinformatics. 32, 5, p. 705-12 8 p.

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer

    Deena M A Gendoo, 1 Apr 2016, In: Bioinformatics. 32, 7, p. 1097-1099 3 p.

    Research output: Contribution to journalArticlepeer-review

  51. Published

    PharmacoGx: an R package for analysis of large pharmacogenomic datasets

    Dong Wang, Deena M A Gendoo, 15 Apr 2016, In: Bioinformatics. 32, 8, p. 1244-1246 3 p.

    Research output: Contribution to journalArticlepeer-review

  52. Published

    Goldilocks: A tool for identifying genomic regions that are ‘just right’

    Samuel Nicholls, 1 Jul 2016, In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  53. 2017
  54. Published

    Quantification of fibrous spatial point patterns from single-molecule localization microscopy (SMLM) data

    Dylan Owen, 20 Jan 2017, In: Bioinformatics. 33, 11, p. 1703-1711 9 p.

    Research output: Contribution to journalArticlepeer-review

  55. Published

    switchde: inference of switch-like differential expression along single-cell trajectories

    Christopher Yau, 15 Apr 2017, In: Bioinformatics. 33, 8, p. 1241-1242 2 p.

    Research output: Contribution to journalArticlepeer-review

  56. E-pub ahead of print

    RepLong - de novo repeat identification using long read sequencing data

    Shan He, 6 Nov 2017, (E-pub ahead of print) In: Bioinformatics. 9 p., btx717.

    Research output: Contribution to journalArticlepeer-review

  57. 2018
  58. E-pub ahead of print

    A descriptive marker gene approach to single-cell pseudotime inference

    Christopher Yau, 23 Jun 2018, (E-pub ahead of print) In: Bioinformatics. bty498.

    Research output: Contribution to journalArticlepeer-review

  59. Published

    Ontology-based validation and identification of regulatory phenotypes

    Georgios Gkoutos, 1 Sep 2018, In: Bioinformatics. 34, 17, p. i857-i865

    Research output: Contribution to journalArticlepeer-review

  60. 2019
  61. E-pub ahead of print

    ATEN: And/Or Tree Ensemble for inferring accurate Boolean network topology and dynamics

    David Parker & Shan He, 17 Jul 2019, (E-pub ahead of print) In: Bioinformatics. 8 p., btz563.

    Research output: Contribution to journalArticlepeer-review

  62. 2020
  63. Published
  64. Accepted/In press

    PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data

    Shan He, 13 Jul 2020, (Accepted/In press) In: Bioinformatics. 7 p.

    Research output: Contribution to journalArticlepeer-review

  65. E-pub ahead of print

    Colour Deconvolution – stain unmixing in histological imaging

    Gabriel Landini, 30 Sep 2020, (E-pub ahead of print) In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  66. Published

    Struct: an R/bioconductor-based framework for standardised metabolomics data analysis and beyond

    Andris Jankevics & Ralf Weber, Dec 2020, In: Bioinformatics. 36, 22-23, p. 5551–5552

    Research output: Contribution to journalArticlepeer-review