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Abstract
Purpose: The aim of this study was to develop a model‐based deep learning architecture to accurately reconstruct fiber orientation distributions (FODs) from a reduced number of diffusion‐weighted images (DWIs), facilitating accurate analysis with reduced acquisition times.
Methods: Our proposed architecture, Spherical Deconvolution Network (SDNet), performed FOD reconstruction by mapping 30 DWIs to fully sampled FODs, which have been fit to 288 DWIs. SDNet included DWI‐consistency blocks within the network architecture, and a fixel‐classification penalty within the loss function. SDNet was trained on a subset of the Human Connectome Project, and its performance compared with FOD‐Net, and multishell multitissue constrained spherical deconvolution.
Results: SDNet achieved the strongest results with respect to angular correlation coefficient and sum of squared errors. When the impact of the fixel‐classification penalty was increased, we observed an improvement in performance metrics reliant on segmenting the FODs into the correct number of fixels.
Conclusion: Inclusion of DWI‐consistency blocks improved reconstruction performance, and the fixel‐classification penalty term offered increased control over the angular separation of fixels in the reconstructed FODs.
Methods: Our proposed architecture, Spherical Deconvolution Network (SDNet), performed FOD reconstruction by mapping 30 DWIs to fully sampled FODs, which have been fit to 288 DWIs. SDNet included DWI‐consistency blocks within the network architecture, and a fixel‐classification penalty within the loss function. SDNet was trained on a subset of the Human Connectome Project, and its performance compared with FOD‐Net, and multishell multitissue constrained spherical deconvolution.
Results: SDNet achieved the strongest results with respect to angular correlation coefficient and sum of squared errors. When the impact of the fixel‐classification penalty was increased, we observed an improvement in performance metrics reliant on segmenting the FODs into the correct number of fixels.
Conclusion: Inclusion of DWI‐consistency blocks improved reconstruction performance, and the fixel‐classification penalty term offered increased control over the angular separation of fixels in the reconstructed FODs.
Original language | English |
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Article number | 30187 |
Number of pages | 14 |
Journal | Magnetic Resonance in Medicine |
Early online date | 9 Jun 2024 |
DOIs | |
Publication status | E-pub ahead of print - 9 Jun 2024 |
Keywords
- fixel‐based analysis
- model‐based deep learning
- FOD reconstruction
- diffusion MRI
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Baskerville: a national accelerated compute resource
Cai, B. (Co-Investigator) & Morris, A. (Principal Investigator)
Lenovo UK Limited, Engineering & Physical Science Research Council
13/10/20 → 31/03/25
Project: Research Councils
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Baskerville 2.0: Enhanced Provision for High End and On-Demand Users
Styles, I. (Principal Investigator)
Engineering & Physical Science Research Council
4/01/22 → 3/05/22
Project: Research Councils