Provenance storage, querying, and visualization in PBase

Víctor Cuevas-Vicenttín; Parisa Kianmajd; Bertram Ludäscher; Paolo Missier; Fernando Chirigati; Yaxing Wei; David Koop; Saumen Dey

doi:10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase

Víctor Cuevas-Vicenttín^*, Parisa Kianmajd, Bertram Ludäscher, Paolo Missier, Fernando Chirigati, Yaxing Wei, David Koop, Saumen Dey

^*Corresponding author for this work

Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

Original language	English
Title of host publication	Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers
Editors	Beth Plale, Bertram Ludäscher, Bertram Ludäscher
Publisher	Springer Verlag
Pages	239-241
Number of pages	3
ISBN (Electronic)	9783319164618
DOIs	https://doi.org/10.1007/978-3-319-16462-5_24
Publication status	Published - 2015
Event	5th International Provenance and Annotation Workshop, IPAW 2014 - Cologne, Germany Duration: 10 Jun 2014 → 11 Jun 2014

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	8628
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	5th International Provenance and Annotation Workshop, IPAW 2014
Country/Territory	Germany
City	Cologne
Period	10/06/14 → 11/06/14

Bibliographical note

Funding Information:
The authors thank: members of the DataONE Provenance Working Group, for helping in the specification of PBase; and members of the DataONE EVA Working Group, for their collaboration. This work was supported by NSF Award OCI-0830944 (DataONE).

Publisher Copyright:
© Springer International Publishing Switzerland 2015.

Keywords

PBase
Provenance repository
ProvONE
Scientific workflows

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-319-16462-5_24

Cite this

Cuevas-Vicenttín, V., Kianmajd, P., Ludäscher, B., Missier, P., Chirigati, F., Wei, Y., Koop, D., & Dey, S. (2015). Provenance storage, querying, and visualization in PBase. In B. Plale, B. Ludäscher, & B. Ludäscher (Eds.), Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers (pp. 239-241). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8628). Springer Verlag. https://doi.org/10.1007/978-3-319-16462-5_24

Cuevas-Vicenttín, Víctor ; Kianmajd, Parisa ; Ludäscher, Bertram et al. / Provenance storage, querying, and visualization in PBase. Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. editor / Beth Plale ; Bertram Ludäscher ; Bertram Ludäscher. Springer Verlag, 2015. pp. 239-241 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

@inproceedings{aa09355961244f4cb3beaf96e5d66369,

title = "Provenance storage, querying, and visualization in PBase",

abstract = "We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.",

keywords = "PBase, Provenance repository, ProvONE, Scientific workflows",

author = "V{\'i}ctor Cuevas-Vicentt{\'i}n and Parisa Kianmajd and Bertram Lud{\"a}scher and Paolo Missier and Fernando Chirigati and Yaxing Wei and David Koop and Saumen Dey",

note = "Funding Information: The authors thank: members of the DataONE Provenance Working Group, for helping in the specification of PBase; and members of the DataONE EVA Working Group, for their collaboration. This work was supported by NSF Award OCI-0830944 (DataONE). Publisher Copyright: {\textcopyright} Springer International Publishing Switzerland 2015.; 5th International Provenance and Annotation Workshop, IPAW 2014 ; Conference date: 10-06-2014 Through 11-06-2014",

year = "2015",

doi = "10.1007/978-3-319-16462-5_24",

language = "English",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer Verlag",

pages = "239--241",

editor = "Beth Plale and Bertram Lud{\"a}scher and Bertram Lud{\"a}scher",

booktitle = "Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers",

}

Cuevas-Vicenttín, V, Kianmajd, P, Ludäscher, B, Missier, P, Chirigati, F, Wei, Y, Koop, D & Dey, S 2015, Provenance storage, querying, and visualization in PBase. in B Plale, B Ludäscher & B Ludäscher (eds), Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8628, Springer Verlag, pp. 239-241, 5th International Provenance and Annotation Workshop, IPAW 2014, Cologne, Germany, 10/06/14. https://doi.org/10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase. / Cuevas-Vicenttín, Víctor; Kianmajd, Parisa; Ludäscher, Bertram et al.
Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. ed. / Beth Plale; Bertram Ludäscher; Bertram Ludäscher. Springer Verlag, 2015. p. 239-241 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8628).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - Provenance storage, querying, and visualization in PBase

AU - Cuevas-Vicenttín, Víctor

AU - Kianmajd, Parisa

AU - Ludäscher, Bertram

AU - Missier, Paolo

AU - Chirigati, Fernando

AU - Wei, Yaxing

AU - Koop, David

AU - Dey, Saumen

N1 - Funding Information: The authors thank: members of the DataONE Provenance Working Group, for helping in the specification of PBase; and members of the DataONE EVA Working Group, for their collaboration. This work was supported by NSF Award OCI-0830944 (DataONE). Publisher Copyright: © Springer International Publishing Switzerland 2015.

PY - 2015

Y1 - 2015

N2 - We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

AB - We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

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KW - Provenance repository

KW - ProvONE

KW - Scientific workflows

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DO - 10.1007/978-3-319-16462-5_24

M3 - Conference contribution

AN - SCOPUS:84928801963

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 239

EP - 241

BT - Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers

A2 - Plale, Beth

A2 - Ludäscher, Bertram

PB - Springer Verlag

T2 - 5th International Provenance and Annotation Workshop, IPAW 2014

Y2 - 10 June 2014 through 11 June 2014

ER -

Cuevas-Vicenttín V, Kianmajd P, Ludäscher B, Missier P, Chirigati F, Wei Y et al. Provenance storage, querying, and visualization in PBase. In Plale B, Ludäscher B, Ludäscher B, editors, Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. Springer Verlag. 2015. p. 239-241. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase

Abstract

Publication series

Conference

Bibliographical note

Keywords

ASJC Scopus subject areas

Access to Document

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Cite this