stk: An extendable Python framework for automated molecular and supramolecular structure assembly and discovery

Lukas Turcani, Andrew Tarzia, Filip T. Szczypiński, Kim E. Jelfs*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

Computational software workflows are emerging as all-in-one solutions to speed up the discovery of new materials. Many computational approaches require the generation of realistic structural models for property prediction and candidate screening. However, molecular and supramolecular materials represent classes of materials with many potential applications for which there is no go-to database of existing structures or general protocol for generating structures. Here, we report a new version of the supramolecular toolkit, stk, an open-source, extendable, and modular Python framework for general structure generation of (supra)molecular structures. Our construction approach works on arbitrary building blocks and topologies and minimizes the input required from the user, making stk user-friendly and applicable to many material classes. This version of stk includes metal-containing structures and rotaxanes as well as general implementation and interface improvements. Additionally, this version includes built-in tools for exploring chemical space with an evolutionary algorithm and tools for database generation and visualization. The latest version of stk is freely available at github.com/lukasturcani/stk.

Original languageEnglish
Article number214102
Number of pages13
JournalJournal of Chemical Physics
Volume154
Issue number21
Early online date1 Jun 2021
DOIs
Publication statusPublished - 7 Jun 2021

Bibliographical note

Publisher Copyright:
© 2021 Author(s).

ASJC Scopus subject areas

  • General Physics and Astronomy
  • Physical and Theoretical Chemistry

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