Investigation of the fundamental strategy for interoperability of description of biological measurements

Hiroshi Masuya; Georgios Gkoutos; Nobuhiko Tanaka; Kazunori Waki; Yoshihiro Okuda; Tatsuya Kushida; Norio Kobayashi; Koji Doi; Kouji Kozaki; Robert Hoehndorf; Shigeharu Wakana; Tetsuro Toyoda; Riichiro Mizoguchi

Investigation of the fundamental strategy for interoperability of description of biological measurements

Hiroshi Masuya, Georgios Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi

Research output: Other contribution

Abstract

Aiming the facilitation of the advanced integration of measurement data across various biological experiments, we have investigated the fundamental methodology to expand the Phenotypic Quality Ontology (PATO) commonly used for descriptions of biological phenotypes with the framework of the Yet Another More Advanced Top-level Ontology (YAMATO). The mapping of ontology terms of PATO to YAMATO?s framework represents several advanced aspects such as the introduction of the classification of quality values to represent scales of measurements, the distinction of the different contexts of the comparison of ordinal values, and the establishment of the interoperability of quality description formalisms between different top-level ontologies. In this study, we propose a logical base to integrate cross-species and cross-experimental annotations of biological measurements.

Original language	English
Publication status	Published - 2011

Cite this

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title = "Investigation of the fundamental strategy for interoperability of description of biological measurements",

abstract = "Aiming the facilitation of the advanced integration of measurement data across various biological experiments, we have investigated the fundamental methodology to expand the Phenotypic Quality Ontology (PATO) commonly used for descriptions of biological phenotypes with the framework of the Yet Another More Advanced Top-level Ontology (YAMATO). The mapping of ontology terms of PATO to YAMATO?s framework represents several advanced aspects such as the introduction of the classification of quality values to represent scales of measurements, the distinction of the different contexts of the comparison of ordinal values, and the establishment of the interoperability of quality description formalisms between different top-level ontologies. In this study, we propose a logical base to integrate cross-species and cross-experimental annotations of biological measurements.",

author = "Hiroshi Masuya and Georgios Gkoutos and Nobuhiko Tanaka and Kazunori Waki and Yoshihiro Okuda and Tatsuya Kushida and Norio Kobayashi and Koji Doi and Kouji Kozaki and Robert Hoehndorf and Shigeharu Wakana and Tetsuro Toyoda and Riichiro Mizoguchi",

year = "2011",

language = "English",

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TY - GEN

T1 - Investigation of the fundamental strategy for interoperability of description of biological measurements

AU - Masuya, Hiroshi

AU - Gkoutos, Georgios

AU - Tanaka, Nobuhiko

AU - Waki, Kazunori

AU - Okuda, Yoshihiro

AU - Kushida, Tatsuya

AU - Kobayashi, Norio

AU - Doi, Koji

AU - Kozaki, Kouji

AU - Hoehndorf, Robert

AU - Wakana, Shigeharu

AU - Toyoda, Tetsuro

AU - Mizoguchi, Riichiro

PY - 2011

Y1 - 2011

N2 - Aiming the facilitation of the advanced integration of measurement data across various biological experiments, we have investigated the fundamental methodology to expand the Phenotypic Quality Ontology (PATO) commonly used for descriptions of biological phenotypes with the framework of the Yet Another More Advanced Top-level Ontology (YAMATO). The mapping of ontology terms of PATO to YAMATO?s framework represents several advanced aspects such as the introduction of the classification of quality values to represent scales of measurements, the distinction of the different contexts of the comparison of ordinal values, and the establishment of the interoperability of quality description formalisms between different top-level ontologies. In this study, we propose a logical base to integrate cross-species and cross-experimental annotations of biological measurements.

AB - Aiming the facilitation of the advanced integration of measurement data across various biological experiments, we have investigated the fundamental methodology to expand the Phenotypic Quality Ontology (PATO) commonly used for descriptions of biological phenotypes with the framework of the Yet Another More Advanced Top-level Ontology (YAMATO). The mapping of ontology terms of PATO to YAMATO?s framework represents several advanced aspects such as the introduction of the classification of quality values to represent scales of measurements, the distinction of the different contexts of the comparison of ordinal values, and the establishment of the interoperability of quality description formalisms between different top-level ontologies. In this study, we propose a logical base to integrate cross-species and cross-experimental annotations of biological measurements.

UR - http://hdl.handle.net/2160/11152

M3 - Other contribution

ER -

Investigation of the fundamental strategy for interoperability of description of biological measurements

Abstract

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