Abstract
UNLABELLED: Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.
AVAILABILITY: Both source codes and executable binaries are available at http://mips.gsf.de/services/analysis/gepard
Original language | English |
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Pages (from-to) | 1026-8 |
Number of pages | 3 |
Journal | Bioinformatics |
Volume | 23 |
Issue number | 8 |
DOIs | |
Publication status | Published - 15 Apr 2007 |
Keywords
- Algorithms
- Chromosome Mapping
- Computer Graphics
- Sensitivity and Specificity
- Software
- User-Computer Interface
- Journal Article