Abstract
Autofocus is an important issue in electron microscopy, particularly at high magnification. It consists in searching for sharp image of a specimen, that is corresponding to the peak of focus. The paper presents a machine learning solution to this issue. From seven focus measures, support vector machines fitting is used to compute the peak with an initial guess obtained from a gradient ascent search, that is search in the direction of higher gradient of focus. The solution is implemented on a Carl Zeiss Auriga FE-SEM with a three benchmark specimen and magnification ranging from x300 to x160 000. Based on regularized nonlinear least squares optimization, the solution overtakes the literature nonregularized search and Fibonacci search methods: accuracy improvement ranges from 1.25 to 8 times, fidelity improvement ranges from 1.6 to 28 times, and speed improvement ranges from 1.5 to 4 times. Moreover, the solution is practical by requiring only an off-line easy automatic train with cross-validation of the support vector machines.
| Original language | English |
|---|---|
| Pages (from-to) | 79-87 |
| Number of pages | 9 |
| Journal | Journal of Microscopy |
| Volume | 264 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - 1 Oct 2016 |
Bibliographical note
Publisher Copyright:© 2016 The Authors Journal of Microscopy © 2016 Royal Microscopical Society
Keywords
- Autofocus
- gradient ascent search
- machine learning
- normalized variance
- scanning electron microscopy
- support vector machines regression
ASJC Scopus subject areas
- Pathology and Forensic Medicine
- Histology