Automated assembly of species metabolomes through data submission into a public repository

Reza M. Salek; Pablo Conesa; Keeva Cochrane; Kenneth Haug; Namrata Kale; Pablo Moreno; Kalai Vanii Jayaseelan; Jose Ramon Macias; Venkata chandrasekhar Nainala; Robert D. Hall; Laura K. Reed; Mark R. Viant; Claire O'Donovan; Christoph Steinbeck; Mark Williams

doi:10.1093/gigascience/gix062

Automated assembly of species metabolomes through data submission into a public repository

Reza M. Salek, Pablo Conesa, Keeva Cochrane, Kenneth Haug, Namrata Kale, Pablo Moreno, Kalai Vanii Jayaseelan, Jose Ramon Macias, Venkata chandrasekhar Nainala, Robert D. Hall, Laura K. Reed, Mark R. Viant, Claire O'Donovan, Christoph Steinbeck^*, Mark Williams

^*Corresponding author for this work

Biosciences

Research output: Contribution to journal › Comment/debate › peer-review

5 Citations (Scopus)

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Abstract

Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

Original language	English
Article number	gix062
Pages (from-to)	1-4
Journal	GigaScience
Volume	6
Issue number	8
Early online date	19 Jul 2017
DOIs	https://doi.org/10.1093/gigascience/gix062
Publication status	Published - 1 Aug 2017

Keywords

Curation
Databases
Metabolomics
Species metabolomes

ASJC Scopus subject areas

Health Informatics
Computer Science Applications

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10.1093/gigascience/gix062Licence: Creative Commons: Attribution (CC BY)

Salek_et_al_Automated_assembly_of_species_GigaScience_2017
Published in GigaScience on 19/07/2017 DOI: 10.1093/gigascience/gix062
Final published version, 668 KBLicence: Creative Commons: Attribution (CC BY)

https://academic.oup.com/gigascience/article/6/8/1/3979349Licence: Creative Commons: Attribution (CC BY)

Cite this

Salek, R. M., Conesa, P., Cochrane, K., Haug, K., Kale, N., Moreno, P., Jayaseelan, K. V., Macias, J. R., Nainala, V. C., Hall, R. D., Reed, L. K., Viant, M. R., O'Donovan, C., Steinbeck, C., & Williams, M. (2017). Automated assembly of species metabolomes through data submission into a public repository. GigaScience, 6(8), 1-4. Article gix062. https://doi.org/10.1093/gigascience/gix062

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AU - Salek, Reza M.

AU - Conesa, Pablo

AU - Cochrane, Keeva

AU - Haug, Kenneth

AU - Kale, Namrata

AU - Moreno, Pablo

AU - Jayaseelan, Kalai Vanii

AU - Macias, Jose Ramon

AU - Nainala, Venkata chandrasekhar

AU - Hall, Robert D.

AU - Reed, Laura K.

AU - Viant, Mark R.

AU - O'Donovan, Claire

AU - Steinbeck, Christoph

AU - Williams, Mark

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AB - Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

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Automated assembly of species metabolomes through data submission into a public repository

Abstract

Keywords

ASJC Scopus subject areas

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