AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

F Legeai; S Shigenobu; J-P Gauthier; John Colbourne; C Rispe; O Collin; S Richards; A C C Wilson; T Murphy; D Tagu

doi:10.1111/j.1365-2583.2009.00930.x

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

F Legeai, S Shigenobu, J-P Gauthier, John Colbourne, C Rispe, O Collin, S Richards, A C C Wilson, T Murphy, D Tagu

Biosciences

Research output: Contribution to journal › Article › peer-review

79 Citations (Scopus)

Abstract

AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at http://www.aphidbase.com.

Original language	English
Pages (from-to)	5-12
Number of pages	8
Journal	Insect Molecular Biology
Volume	19 Suppl 2
DOIs	https://doi.org/10.1111/j.1365-2583.2009.00930.x
Publication status	Published - Mar 2010

Keywords

Animals
Aphids
Computational Biology
Databases, Genetic
Genome, Insect
Peas
Software

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10.1111/j.1365-2583.2009.00930.x

Cite this

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title = "AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome",

abstract = "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at http://www.aphidbase.com.",

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author = "F Legeai and S Shigenobu and J-P Gauthier and John Colbourne and C Rispe and O Collin and S Richards and Wilson, {A C C} and T Murphy and D Tagu",

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doi = "10.1111/j.1365-2583.2009.00930.x",

language = "English",

volume = "19 Suppl 2",

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AU - Legeai, F

AU - Shigenobu, S

AU - Gauthier, J-P

AU - Colbourne, John

AU - Rispe, C

AU - Collin, O

AU - Richards, S

AU - Wilson, A C C

AU - Murphy, T

AU - Tagu, D

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KW - Animals

KW - Aphids

KW - Computational Biology

KW - Databases, Genetic

KW - Genome, Insect

KW - Peas

KW - Software

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DO - 10.1111/j.1365-2583.2009.00930.x

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JO - Insect Molecular Biology

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ER -

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

Abstract

Keywords

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