Development of robust analytical pipelines for the analysis of microbial community data from clinical samples

Project Details

Short titleDevelopment of robust analytical pipelines for the analysis of microbial community data from clinical samples
StatusFinished
Effective start/end date1/09/12 → 31/08/15

Funding

  • Medical Research Council

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  • Real-time, portable genome sequencing for Ebola surveillance

    Quick, J., Loman, N. J., Duraffour, S., Simpson, J. T., Severi, E., Cowley, L., Bore, J. A., Koundouno, R., Dudas, G., Mikhail, A., Ouédraogo, N., Afrough, B., Bah, A., Baum, J. H. J., Becker-Ziaja, B., Boettcher, J. P., Cabeza-Cabrerizo, M., Camino-Sánchez, Á., Carter, L. L. & Doerrbecker, J. & 82 others, Enkirch, T., García-Dorival, I., Hetzelt, N., Hinzmann, J., Holm, T., Kafetzopoulou, L. E., Koropogui, M., Kosgey, A., Kuisma, E., Logue, C. H., Mazzarelli, A., Meisel, S., Mertens, M., Michel, J., Ngabo, D., Nitzsche, K., Pallasch, E., Patrono, L. V., Portmann, J., Repits, J. G., Rickett, N. Y., Sachse, A., Singethan, K., Vitoriano, I., Yemanaberhan, R. L., Zekeng, E. G., Racine, T., Bello, A., Sall, A. A., Faye, O., Faye, O., Magassouba, N., Williams, C. V., Amburgey, V., Winona, L., Davis, E., Gerlach, J., Washington, F., Monteil, V., Jourdain, M., Bererd, M., Camara, A., Somlare, H., Camara, A., Gerard, M., Bado, G., Baillet, B., Delaune, D., Nebie, K. Y., Diarra, A., Savane, Y., Pallawo, R. B., Gutierrez, G. J., Milhano, N., Roger, I., Williams, C. J., Yattara, F., Lewandowski, K., Taylor, J., Rachwal, P., Turner, D. J., Pollakis, G., Hiscox, J. A., Matthews, D. A., O'Shea, M. K., Johnston, A. M., Wilson, D., Hutley, E., Smit, E., Di Caro, A., Wölfel, R., Stoecker, K., Fleischmann, E., Gabriel, M., Weller, S. A., Koivogui, L., Diallo, B., Keïta, S., Rambaut, A., Formenty, P., Günther, S. & Carroll, M. W., 11 Feb 2016, In: Nature. 530, 7589, p. 228-232 5 p.

    Research output: Contribution to journal › Article › peer-review

    614 Citations (Scopus)

  • A complete bacterial genome assembled de novo using only nanopore sequencing data

    Loman, N. J., Quick, J. & Simpson, J. T., Aug 2015, In: Nature Methods. 12, 8, p. 733-5 3 p.

    Research output: Contribution to journal › Article › peer-review

    476 Citations (Scopus)

  • Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

    Kay, G. L., Sergeant, M. J., Zhou, Z., Chan, J.Z.-M., Millard, A., Quick, J., Szikossy, I., Pap, I., Spigelman, M., Loman, N. J., Achtman, M., Donoghue, H. D. & Pallen, M. J., 7 Apr 2015, In: Nature Communications. 6, 9 p., 6717.

    Research output: Contribution to journal › Article › peer-review

    Open Access
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    92 Citations (Scopus)
    153 Downloads (Pure)
View all 28 research outputs