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Shan He

Dr.

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PhD projects

Shan He's main research interests are in the multidisciplinary areas of computational biology and computational intelligence, more specifically in optimisation, data mining, agent-based modelling and their applications to proteomics and metabolomics. He is also working in the Centre for Systems Biology in the School of Biosciences.

Dr He is looking for highly motivated doctoral researchers to work in the multidisciplinary areas of computational biology and computational intelligence.

20042024

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  • 2022

    GloDyNE: global topology preserving dynamic network embedding (extended abstract)

    Hou, C., Zhang, H., He, S. & Tang, K., 2 Aug 2022, 2022 IEEE 38th International Conference on Data Engineering (ICDE). Institute of Electrical and Electronics Engineers (IEEE), p. 1545-1546 2 p. (Data engineering).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Preserving coupled nodes in population-based CNP solvers by clustering-elitism search

    Feng, M., Zhao, Q., Zhang, L., He, S. & Shi, Y., 24 Jan 2022, 2021 IEEE Symposium Series on Computational Intelligence (SSCI). Institute of Electrical and Electronics Engineers (IEEE), 7 p. 9660065. (IEEE Symposium Series on Computational Intelligence).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2021

    A network embedding based approach to drug-target interaction prediction using additional implicit networks

    Zhang, H., Hou, C., McDonald, D. & He, S., 7 Sept 2021, Artificial Neural Networks and Machine Learning – ICANN 2021: 30th International Conference on Artificial Neural Networks, Bratislava, Slovakia, September 14–17, 2021, Proceedings, Part I. Farkaš, I., Masulli, P., Otte, S. & Wermter, S. (eds.). 1 ed. Springer, p. 491-503 13 p. (Lecture Notes in Computer Science; vol. 1289).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2020

    HEAT: Hyperbolic Embedding of Attributed Networks

    McDonald, D. & He, S., 30 Oct 2020, Intelligent Data Engineering and Automated Learning – IDEAL 2020: 21st International Conference, Guimaraes, Portugal, November 4–6, 2020, Proceedings, Part I. Analide, C., Novais, P., Camacho, D. & Yin, H. (eds.). 1 ed. Springer, p. 28-40 13 p. (Lecture Notes in Computer Science; vol. 12489).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
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    8 Downloads (Pure)
  • 2015

    A multimodal optimization and surprise based consensus community detection algorithm

    Jia, G., He, S., Zhu, Z., Liu, J. & Tang, K., 11 Jul 2015, GECCO 2015 - Companion Publication of the 2015 Genetic and Evolutionary Computation Conference. Silva, S. (ed.). Association for Computing Machinery , p. 1407-1408 2 p. (GECCO 2015 - Companion Publication of the 2015 Genetic and Evolutionary Computation Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Community detection in social network with pairwisely constrained symmetric non-negative Matrix Factorization

    Shi, X., Lu, H., He, Y. & He, S., 25 Aug 2015, Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015. Pei, J., Tang, J. & Silvestri, F. (eds.). Association for Computing Machinery , p. 541-546 6 p. (Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    29 Citations (Scopus)
  • 2014

    Protein folding estimation using Paired-Bacteria Optimizer

    Li, M., Ji, T., Wu, P., He, S. & Wu, Q., 16 Sept 2014, Proceedings of the 2014 IEEE Congress on Evolutionary Computation, CEC 2014. Institute of Electrical and Electronics Engineers (IEEE), p. 2027-2032 6 p. 6900467

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
  • 2013

    A coevolving memetic algorithm for simultaneous partitional clustering and feature weighting

    Sun, Y., Zhu, Z., He, S. & Ji, Z., 2013, Proceedings of the 2013 IEEE Workshop on Memetic Computing, MC 2013 - 2013 IEEE Symposium Series on Computational Intelligence, SSCI 2013. IEEE Computer Society, p. 9-15 7 p. 6608201. (Proceedings of the 2013 IEEE Workshop on Memetic Computing, MC 2013 - 2013 IEEE Symposium Series on Computational Intelligence, SSCI 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Minimal-redundancy-maximal-relevance feature selection using different relevance measures for omics data classification

    Yang, J., Zhu, Z., He, S. & Ji, Z., 2013, Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2013 - 2013 IEEE Symposium Series on Computational Intelligence, SSCI 2013. p. 246-251 6 p. 6595417. (Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2013 - 2013 IEEE Symposium Series on Computational Intelligence, SSCI 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Citations (Scopus)
  • 2012

    A crown jewel defense strategy based particle swarm optimization

    Lin, L., Ji, Z., He, S. & Zhu, Z., 2012, 2012 IEEE Congress on Evolutionary Computation, CEC 2012. 6256145. (2012 IEEE Congress on Evolutionary Computation, CEC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Citations (Scopus)

  • A memory binary particle swarm optimization

    Ji, Z., Tian, T., He, S. & Zhu, Z., 2012, 2012 IEEE Congress on Evolutionary Computation, CEC 2012. 6256150. (2012 IEEE Congress on Evolutionary Computation, CEC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Citations (Scopus)

  • An empirical comparison of several recent multi-objective evolutionary algorithms

    White, T. & He, S., 2012, Artificial Intelligence Applications and Innovations - 8th IFIP WG 12.5 International Conference, AIAI 2012, Proceedings. PART 1 ed. p. 48-57 10 p. (IFIP Advances in Information and Communication Technology; vol. 381 AICT, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    1 Citation (Scopus)

  • Community detection in social and biological networks using differential evolution

    Jia, G., Cai, Z., Musolesi, M., Wang, Y., Tennant, D. A., Weber, R. J. M., Heath, J. K. & He, S., 30 Oct 2012, Learning and Intelligent Optimization - 6th International Conference, LION 6, Revised Selected Papers. p. 71-85 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7219 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    50 Citations (Scopus)

  • Community detection using cooperative co-evolutionary differential evolution

    Huang, Q., White, T., Jia, G., Musolesi, M., Turan, N., Tang, K., He, S., Heath, J. K. & Yao, X., 2012, Parallel Problem Solving from Nature, PPSN XII - 12th International Conference, Proceedings. PART 2 ed. p. 235-244 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7492 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    20 Citations (Scopus)

  • Memetic clustering based on particle swarm optimizer and K-means

    Zhu, Z., Liu, W., He, S. & Ji, Z., 2012, 2012 IEEE Congress on Evolutionary Computation, CEC 2012. 6252916. (2012 IEEE Congress on Evolutionary Computation, CEC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Citations (Scopus)

  • Memetic three-dimensional gabor feature extraction for hyperspectral imagery classification

    Zhu, Z., Shen, L., Sun, Y., He, S. & Ji, Z., 2012, Advances in Swarm Intelligence - Third International Conference, ICSI 2012, Proceedings. PART 1 ed. p. 479-488 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7331 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Citations (Scopus)

  • Survival analysis of gene expression data using PSO based radial basis function networks

    Liu, W., Ji, Z., He, S. & Zhu, Z., 2012, 2012 IEEE Congress on Evolutionary Computation, CEC 2012. 6256144. (2012 IEEE Congress on Evolutionary Computation, CEC 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Citation (Scopus)
  • 2008

    Application of a Group Search Optimization based Artificial Neural Network to Machine Condition Monitoring

    He, S. & Li, X., 18 Sept 2008, Emerging Technologies and Factory Automation, 2008. ETFA 2008. Institute of Electrical and Electronics Engineers (IEEE), p. 1260-1266 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    22 Citations (Scopus)