Luisa Orsini

Accepting PhD Students

PhD projects

In pursuit of this interest Luisa Orsini contributed significantly to the development of science. Dr Orsini recently showcased the paleogenomic approach as the most powerful way to reconstruct evolutionary dynamics in nature and to forecast future adaptive responses to environmental stress, including climate change (Orsini et al, 2013 TREE).

Dr Orsini is currently recruiting postdoctoral researchers in biostatistics and bioinformatics. Researchers recruited will be working in a highly multidisciplinary research that bridges "omics" technologies, modeling, evolutionary biology and paleogenomics.

Research activity per year

56 Article
11 Abstract
5 Review article
2 Chapter (peer-reviewed)
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1 - 50 out of 82 results

2024
An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding
Perry, W. B., Seymour, M., Orsini, L., Jâms, I. B., Milner, N., Edwards, F., Harvey, R., de Bruyn, M., Bista, I., Walsh, K., Emmett, B., Blackman, R., Altermatt, F., Lawson Handley, L., Mächler, E., Deiner, K., Bik, H. M., Carvalho, G., Colbourne, J., Cosby, B. J., & 2 othersDurance, I. & Creer, S., 23 May 2024, In: Nature Communications. 15, 1, 13 p., 4372.
Research output: Contribution to journal › Article › peer-review

Open Access
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27 Downloads (Pure)
Biodiversity Management Challenges: A Policy Brief
Holden, L., Lee, R., Orsini, L., Eastwood, N., Zhou, J. & Cavoski, A., 1 May 2024, (E-pub ahead of print) In: Environmental Law Review.
Research output: Contribution to journal › Review article › peer-review

Open Access
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31 Downloads (Pure)
Single metabarcoding multiplex captures community‐level freshwater biodiversity and beyond
Eastwood, N., Kissane, S., Campbell, L., Briscoe, A. G., Egeter, B. & Orsini, L., 15 Feb 2024, In: Environmental DNA. 6, 1, 11 p., e515.
Research output: Contribution to journal › Article › peer-review

Open Access
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29 Downloads (Pure)
2023
100 years of anthropogenic impact causes changes in freshwater functional biodiversity
Eastwood, N., Zhou, J., Derelle, R., Abdallah, M. A-E., Stubbings, W. A., Jia, Y., Crawford, S. E., Davidson, T. A., Colbourne, J. K., Creer, S., Bik, H., Hollert, H., Orsini, L. & Weigel, D., 7 Nov 2023, In: eLife. 12, 28 p., RP86576.
Research output: Contribution to journal › Article › peer-review

Open Access
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47 Downloads (Pure)
Harnessing water fleas for water reclamation: A nature-based tertiary wastewater treatment technology
Abdullahi, M., Stead, I., Bennett, S., Orozco, R., Abdallah, M. A., Jabbari, S., Macaskie, L. E., Tzella, A., Krause, S., Al-Duri, B., Lee, R. G., Herbert, B., Thompson, P., Schalkwyk, M., Getahun, S., Dearn, K. D. & Orsini, L., 20 Dec 2023, In: Science of the Total Environment. 905, 11 p., 167224.
Research output: Contribution to journal › Article › peer-review

Open Access
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105 Downloads (Pure)
The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome
Chaturvedi, A., Li, X., Dhandapani, V., Marshall, H., Kissane, S., Cuenca Cambronero, M., Adesole, G., Ferriol, C., Ruiz-Romero, M., Marangio, P., Guigó, R., Rago, D., Mirbahai, L., Eastwood, N., Colbourne, J., Zhou, J., Mallon, E. & Orsini, L., 28 Aug 2023, (E-pub ahead of print) In: Nucleic Acids Research. gkad685.
Research output: Contribution to journal › Article › peer-review

Open Access
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39 Downloads (Pure)
The Precision Toxicology Initiative
PrecisionTox, 19 May 2023, (E-pub ahead of print) In: Toxicology Letters.
Research output: Contribution to journal › Article › peer-review
2022
Daphnia as a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution
Abdullahi, M., Li, X., Abdallah, M. A-E., Stubbings, W., Yan, N., Barnard, M., Guo, L-H., Colbourne, J. K. & Orsini, L., 18 Oct 2022, In: Environmental Science and Technology. 56, 20, p. 14237-14248 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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2 Citations (Scopus)

172 Downloads (Pure)
Historical exposure to chemicals reduces tolerance to novel chemical stress in Daphnia (waterflea)
Abdullahi, M., Zhou, J., Dhandapani, V., Chaturvedi, A. & Orsini, L., 4 Apr 2022, In: Molecular Ecology. 31, 11, p. 3098-3111 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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125 Downloads (Pure)
The Time Machine framework: monitoring and prediction of biodiversity loss
Eastwood, N., Stubbings, W. A., Abdallah, M. A-E., Durance, I., Paavola, J., Dallimer, M., Pantel, J. H., Johnson, S., Zhou, J., Hosking, J. S., Brown, J., Ullah, S., Krause, S., Hannah, D., Crawford, S., Widmann, M. & Orsini, L., Feb 2022, In: Trends in Ecology & Evolution. 37, 2, p. 138-146 9 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
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201 Downloads (Pure)
2021
Evolutionary mechanisms underpinning fitness response to multiple stressors in Daphnia
Cuenca‐cambronero, M., Pantel, J. H., Marshall, H., Nguyen, T. T. T., Tomero‐sanz, H. & Orsini, L., 27 May 2021, (E-pub ahead of print) In: Evolutionary Applications. 14, 10, p. 2457-2469
Research output: Contribution to journal › Article › peer-review

Open Access
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125 Downloads (Pure)
Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia
Chaturvedi, A., Zhou, J., Raeymaekers, J. A. M., Orsini, L., Czypionka, T., Jackson, C. E., Spanier, K. I., Shaw, J. R., Colbourne, J. & De Meester, L., 14 Jul 2021, In: Nature Communications. 12, 1, 1 p., 4306 .
Research output: Contribution to journal › Article › peer-review

Open Access
File
151 Downloads (Pure)
Protocol for assay of transposase accessible chromatin sequencing in non-model species
Kissane, S., Dhandapani, V. & Orsini, L., 19 Mar 2021, In: STAR Protocols. https://doi.org/10.1016/j.xpro.2021.100341
Research output: Contribution to journal › Article › peer-review

Open Access
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265 Downloads (Pure)
Using Daphnia for bioremediation
Dearn, K. & Orsini, L., 17 Jun 2021, Patent No. WO2021116229 , Priority date 9 Dec 2020, Priority No. PCT/EP2020/085377
Research output: Patent
2020
Roundup causes embryonic development failure, activates tumorigenesis pathways and alters gut microbiota functionality in non-target species
Suppa, A., Kvist, J., Li, X., Dhandapani, V., Almulla, H., Tian, A., Kissane, S., Zhou, J., Perotti, A., Mangelson, H., Langford, K., Rossi, V., Brown, J. B. & Orsini, L., 15 Dec 2020, In: Microbiome. 8, 1, 15 p., 170 (2020).
Research output: Contribution to journal › Article › peer-review

Open Access
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187 Downloads (Pure)
2019
Co-located contemporaneous mapping of morphological, hydrological, chemical, and biological conditions in a 5th order mountain stream network, Oregon, USA
Ward, A., Zarnetske, J., Baranov, V., Blaen, P., Brekenfeld, N., Chu, R., Derelle, R., Drummond, J., Fleckenstein, J., Garayburu-Caruso, V., Graham, E., Hannah, D., Harman, C., Hixson, J., Knapp, J. L. A., Krause, S., Kurz, M. J., Lewandowski, J., Li, A., Martí, E., & 16 othersMiller, M., Milner, S., Neill, K., Orsini, L., Packman, A. I., Plont, S., Renteria, L., Roche, K., Royer, T., Schmadel, N. M., Segura, C., Stegen, J., Toyoda, J., Wells, J., Wisnoski, N. I. & Wondzell, S. M., 22 Oct 2019, In: Earth System Science Data. 11, 4, p. 1567-1581 15 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
3 Citations (Scopus)

209 Downloads (Pure)
Remasking of Candida albicans β-Glucan in response to environmental pH is regulated by quorum sensing
Cottier, F., Sherrington, S., Cockerill, S., del Olmo Toledo, V., Kissane, S., Tournu, H., Orsini, L., Palmer, G., Perez, J. C. & Hall, R., 15 Oct 2019, In: mBio. 10, 5, e02347-19.
Research output: Contribution to journal › Article › peer-review

Open Access
File
13 Citations (Scopus)

255 Downloads (Pure)
Spatial and temporal variation in river corridor exchange across a 5th-order mountain stream network
Ward, A. S., Wondzell, S. M., Schmadel, N. M., Herzog, S., Zarnetske, J. P., Baranov, V., Blaen, P. J., Brekenfeld, N., Chu, R., Derelle, R., Drummond, J., Fleckenstein, J. H., Garayburu-Caruso, V., Graham, E., Hannah, D., Harman, C. J., Hixson, J., Knapp, J. L. A., Krause, S., Kurz, M. J., & 17 othersLewandowski, J., Li, A., Martí, E., Miller, M., Milner, A. M., Neil, K., Orsini, L., Packman, A. I., Plont, S., Renteria, L., Roche, K., Royer, T., Segura, C., Stegen, J., Toyoda, J., Wells, J. & Wisnoski, N. I., 20 Dec 2019, In: Hydrology and Earth System Sciences. 23, 12, p. 5199-5225 27 p.
Research output: Contribution to journal › Article › peer-review

Open Access
4 Citations (Scopus)
The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci
Singh, A., Roy Choudhury, S., De, S., Zhang, J., Kissane, S., Dwivedi, V., Ramanathan, P., Petric, M., Orsini, L., Hebenstreit, D. & Brogna, S., 25 Mar 2019, In: eLife. 8, 8, e41444.
Research output: Contribution to journal › Article › peer-review

Open Access
File
9 Citations (Scopus)

226 Downloads (Pure)
Transgenerational response to early spring warming in Daphnia
Toyota, K., Cuenca Cambronero, M., Dhandapani, V., Suppa, A., Rossi, V., Colbourne, J. & Orsini, L., 14 Mar 2019, In: Scientific Reports. 9, 1, 4449.
Research output: Contribution to journal › Article › peer-review

Open Access
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8 Citations (Scopus)

196 Downloads (Pure)
2018
Adaptive responses along a depth and a latitudinal gradient in the endemic seagrass Posidonia oceanica
Jahnke, M., D’ Esposito, D., Orrù, L., Lamontanara, A., Dattolo, E., Badalamenti, F., Mazzuca, S., Procaccini, G. & Orsini, L., 28 Jun 2018, In: Heredity.
Research output: Contribution to journal › Article › peer-review

Open Access
File
6 Citations (Scopus)

201 Downloads (Pure)
Cracking the code of biodiversity responses to past climate change
Nogues-Bravo, D., Rodríguez-Sánchez, F., Orsini, L., de Boer, E., Jansson, R., Morlon, H., Fordham, D. & Jackson, S., 1 Oct 2018, In: Trends in Ecology & Evolution. 33, 10, p. 765-776 12 p.
Research output: Contribution to journal › Review article › peer-review

Open Access
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36 Citations (Scopus)

618 Downloads (Pure)
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes
Orsini, L., Brown, J., Shams Solari, O., Li, D., He, S., Podicheti, R., Stoiber, M., Spanier, K. I., Gilbert, D., Jansen, M., Rusch, D., Pfrender, M. E., Colbourne, J., Frilander, M. J., Kvist, J., Decaestecker, E., De Schamphelaere, K. A. C. & De Meester, L., 1 Feb 2018, In: Molecular Ecology. 27, 4, p. 886-897 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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16 Citations (Scopus)

256 Downloads (Pure)
Evolutionary time traveling in a changing world reveals ‘ecological surprises’
Orsini, L., 2018, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract
Evolution of thermal tolerance in multifarious environments
Cuenca Cambronero, M., Beasley, J., Kissane, S. & Orsini, L., 25 Nov 2018, In: Molecular Ecology. 27, 22, p. 4529-4541
Research output: Contribution to journal › Article › peer-review

Open Access
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12 Citations (Scopus)

180 Downloads (Pure)
Founder effects determine the genetic structure of the water flea Daphnia in Ethiopian reservoirs
Haileselasie, T. H., Mergeay, J., Vanoverbeke, J., Orsini, L. & De Meester, L., Mar 2018, In: Limnology and oceanography. 63, 2, p. 915-926 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
3 Citations (Scopus)

259 Downloads (Pure)
Haemoglobin-mediated response to hyper-thermal stress in the keystone species Daphnia magna
Cuenca Cambronero, M., Zeis, B. & Orsini, L., 1 Jan 2018, In: Evolutionary Applications. 11, 1, p. 112-120
Research output: Contribution to journal › Special issue › peer-review

Open Access
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13 Citations (Scopus)

172 Downloads (Pure)
Predictability of the impact of multiple stressors on the keystone species Daphnia
Cuenca Cambronero, M., Marshall, H., De Meester, L., Davidson, T. A., Beckerman, A. P. & Orsini, L., 4 Dec 2018, In: Scientific Reports. 8, 1, 17572.
Research output: Contribution to journal › Article › peer-review

Open Access
File
11 Citations (Scopus)

193 Downloads (Pure)
Resurrection of Dormant Daphnia Magna: Protocol and Applications
Cuenca Cambronero, M. & Orsini, L., 19 Jan 2018, In: Journal of Visualized Experiments . 131, e56637.
Research output: Contribution to journal › Article › peer-review

Open Access
File
198 Downloads (Pure)
The role of genome structural variation on plastic and constitutive phenotypic divergence in multifarious environments
Orsini, L., 2018, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract › peer-review
2017
Bisulfite sequencing with Daphnia highlights a role for epigenetics in regulating stress response to Microcystis through preferential differential methylation of serine and threonine amino acids
Asselman, J., De Coninck, D. IM., Beert, E., Janssen, C. R., Orsini, L., Pfrender, M. E., Decaestecker, E. & De Schamphelaere, K. AC., 2017, In: Environmental Science & Technology. 51, 2, p. 924–931
Research output: Contribution to journal › Article › peer-review

Open Access
File
37 Citations (Scopus)

256 Downloads (Pure)
Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia
Spanier, K. I., Jansen, M., Decaestecker, E., Huselmans, G., Becker, D., Colbourne, J., Orsini, L., De Meester, L. & Aerts, S., 14 Jul 2017, (E-pub ahead of print) In: Genome Biology and Evolution. 9, 6, p. 1821-1842
Research output: Contribution to journal › Article › peer-review

Open Access
File
10 Citations (Scopus)

238 Downloads (Pure)
Erratum: daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, L., Gilbert, D., Podicheti, R., Jansen, M., Brown, J. B., Solari, O. S., Spanier, K. I., Colbourne, J. K., Rusch, D. B., Decaestecker, E., Asselman, J., De Schamphelaere, K. A. C., Ebert, D., Haag, C. R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A. P., Little, T. J., Chaturvedi, A., & 3 othersPfrender, M. E., De Meester, L. & Frilander, M. J., 31 Jan 2017, In: Scientific Data. 4, 1 p., 170006.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
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3 Citations (Scopus)

136 Downloads (Pure)
Erratum: corrigendum: transcriptome characterisation and simple sequence repeat marker discovery in the seagrass Posidonia oceanica
D'Esposito, D., Orrù, L., Dattolo, E., Bernardo, L., Lamontanara, A., Orsini, L., Serra, I. A., Mazzuca, S. & Procaccini, G., 14 Mar 2017, In: Scientific Data. 4, 1 p., 170025 .
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
File

2 Citations (Scopus)

130 Downloads (Pure)
Evolutionary time traveling: resurrecting the past to deal with the future
Orsini, L., 2017, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract
Population genomics of the ecological model species Daphnia magna
Orsini, L., 2017, (Unpublished).
Research output: Contribution to conference (unpublished) › Poster › peer-review
Thermal tolerance in the keystone species Daphnia magna –a candidate gene and an outlier analysis approach
Jansen, M., Geerts, A., Rago, A., Spanier, K. I., Denis, C., De Meester, L. & Orsini, L., 1 Feb 2017, In: Molecular Ecology.
Research output: Contribution to journal › Article › peer-review

Open Access
File
19 Citations (Scopus)

411 Downloads (Pure)
2016
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors: Daphnia magna transcriptome
Orsini, L., Gilbert, D., Podicheti, R., Jansen, MI., Brown, J. B., Shams Solari, O., Spanier, K. I., Colbourne, J., Rush, D., Decaestecker, E., Asselman, J., De Schamphelaere, K. AC., Ebert, D., Haag, C. R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A. P., Little, T. J., Chaturvedi, A., & 3 othersPfrender, M. E., De Meester, L. & Frilander, M. J., 10 May 2016, In: Scientific Data. 3, 160030 .
Research output: Contribution to journal › Article › peer-review

Open Access
File
60 Citations (Scopus)

172 Downloads (Pure)
Only time can tell: studying long-term evolutionary dynamics using biological archives
Orsini, L., 2016, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract
Tales of a living fossil: from evolution to past environmental stress to persistence to future global change
Orsini, L., 2016, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract › peer-review
Temporal genetic stability in natural populations of the waterflea Daphnia magna in response to strong selection pressure
Orsini, L., Marshall, H., Cuenca Cambronero, M., Chaturvedi, A., Thomas, K. W., Pfrender, M. E., Spanier, K. I. & De Meester, L., Dec 2016, In: Molecular Ecology. 25, 24, p. 6024-6038 15 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
20 Citations (Scopus)

178 Downloads (Pure)
Transcriptome characterisation and SSR markers development in the seagrass Posidonia oceanica
D'Esposito, D., Orru, L., Dattolo, E., Bernardo, L., Lamontanara, A., Orsini, L., Serra, I., Mazzucca, S. & Procaccini, G., 20 Dec 2016, In: Scientific Data. 3, 160115 .
Research output: Contribution to journal › Article › peer-review

Open Access
File
9 Citations (Scopus)

200 Downloads (Pure)
2015
A revolutionary way to reconstruct evolutionary dynamics in nature over centuries
Orsini, L., 2015, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract › peer-review
Jurassic Park: Resurrecting Daphnia to Reconstruct Adaptive Responses to Climate Change
Orsini, L., 2015, (Unpublished).
Research output: Contribution to conference (unpublished) › Poster › peer-review
Only time can tell: studying long-term evolutionary dynamics using biological archives
Orsini, L., 2015, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract
Only time can tell: studying long-term evolutionary dynamics using biological archives
Orsini, L., 2015, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract › peer-review
Only time can tell: studying long-term evolutionary dynamics using biological archives
Orsini, L., 2015, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract
Rare interspecific breeding in Pseudo-nitzschia (Bacillariophyceae)
Amato, A. & Orsini, L., 23 Jun 2015, In: Phytotaxa. 217, 2, p. 145-154 10 p.
Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus)
2014
Tales of a living fossil: from evolution to past environmental stress to persistence to future global change
Orsini, L., 2014, (Unpublished).
Research output: Contribution to conference (unpublished) › Abstract › peer-review
2013

Development of 51 novel EST-linked microsatellites in the threatened seagrass Posidonia oceanica (Posidoniaceae)
D'Esposito, D., Orsini, L. & Procaccini, G., 2013, In: Molecular ecology resources. 13, p. 546-549
Research output: Contribution to journal › Article › peer-review

22 Citations (Scopus)

Luisa Orsini

Research output

Search results