Research output per year
Research output per year
- 1 - 50 out of 71 results
Search results
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2024
Investigating the impact of temperature on growth rate of the root rot fungus, Gymnopus fusipes
Pettifor, B. J., Kajamuhan, A., Denman, S. & Mcdonald, J. E., 25 Jun 2024, In: Access Microbiology. 6, 6, 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Downloads (Pure) -
Soil metabolomics-current challenges and future perspectives
McDonald, J., 1 Jun 2024, In: Soil Biology and Biochemistry. 109382.Research output: Contribution to journal › Review article › peer-review
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2023
Lutispora saccharofermentans sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus Lutispora to include species which are non-spore-forming and mesophilic
McDonald, J., 25 Jan 2023, In: International Journal of Systematic and Evolutionary Microbiology.Research output: Contribution to journal › Article › peer-review
Open Access -
2022
A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater
Kevill, J. L., Pellett, C., Farkas, K., Brown, M. R., Bassano, I., Denise, H., McDonald, J. E., Malham, S. K., Porter, J., Warren, J., Evens, N. P., Paterson, S., Singer, A. C. & Jones, D. L., 20 Feb 2022, In: Science of the Total Environment. 808, 151916.Research output: Contribution to journal › Article › peer-review
Open AccessFile100 Downloads (Pure) -
RNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels
Hillary, L. S., Adriaenssens, E. M., Jones, D. L. & McDonald, J. E., Dec 2022, In: ISME Communications. 2, 1, 10 p., 34.Research output: Contribution to journal › Article › peer-review
Open AccessFile60 Downloads (Pure) -
Using a systematic approach to synthesize existing knowledge on Gymnopus fusipes (syn. Collybia fusipes), the cause of Collybia root rot
Pettifor, B., Denman, S. & McDonald, J., 5 Oct 2022, (E-pub ahead of print) In: Forest Pathology. 52, 5, 14 p., e12766.Research output: Contribution to journal › Review article › peer-review
Open AccessFile114 Downloads (Pure) -
2021
Bacterial biota of forest trees
Pettifor, B. & McDonald, J., 9 Jul 2021, Tree Microbiome: Phyllosphere, Endosphere and Rhizosphere. Asiegbu, F. O. & Kovalchuk, A. (eds.). 1st ed. Academic Press (Elsevier), Vol. 1. p. 161-173 13 p. (Forest Microbiology).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Concentration and quantification of SARS-CoV-2 RNA in wastewater using polyethylene glycol-based concentration and qRT-PCR
Farkas, K., Hillary, L., Thorpe, J., Walker, D., Lowther, J. A., McDonald, J., Malham, S. & Jones, D. L., 23 Feb 2021, In: Methods and Protocols. 4, 1, 9 p., 17.Research output: Contribution to journal › Article › peer-review
Open AccessFile68 Downloads (Pure) -
E. coli Is a poor end-product criterion for assessing the general microbial risk posed from consuming norovirus contaminated shellfish
Sharp, J. H., Clements, K., Diggens, M., McDonald, J. E., Malham, S. K. & Jones, D. L., 19 Feb 2021, In: Frontiers in Microbiology. 12, 14 p., 608888.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Downloads (Pure) -
Improving quantification of bivalve larvae in mixed plankton samples using qPCR: a case study on Mytilus edulis
Alexander, J., Malham, S., Smyth, D., Webb, J., Fidler, D., Bayford, P., McDonald, J. & Le Vay, L., 15 Feb 2021, In: Aquaculture. 532, 10 p., 736003.Research output: Contribution to journal › Article › peer-review
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Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK
Hillary, L. S., Farkas, K., Maher, K. H., Lucaci, A., Thorpe, J., Distaso, M. A., Gaze, W. H., Paterson, S., Burke, T., Connor, T. R., McDonald, J. E., Malham, S. K. & Jones, D. L., 15 Jul 2021, In: Water Research. 200, 10 p., 117214.Research output: Contribution to journal › Article › peer-review
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Shifts in soil structure, biological, and functional diversity under long-term carbon deprivation
George, P. B. L., Fidler, D. B., Van Nostrand, J. D., Atkinson, J. A., Mooney, S. J., Creer, S., Griffiths Robert, I., McDonald, J. E., Robinson, D. A. & Jones, D. L., 14 Sept 2021, In: Frontiers in Microbiology. 12, 16 p., 735022.Research output: Contribution to journal › Article › peer-review
Open AccessFile35 Downloads (Pure) -
Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity
Adriaenssens, E. M., Farkas, K., McDonald, J. E., Jones, D. L., Allison, H. E. & McCarthy, A. J., 15 Sept 2021, In: Water Research. 203, 12 p., 117568.Research output: Contribution to journal › Article › peer-review
Open AccessFile111 Downloads (Pure) -
2020
A multiplex real‐time PCR assay enables simultaneous rapid detection and quantification of bacteria associated with acute oak decline
Crampton, B. G., Plummer, S., Kaczmarek, M., McDonald, J. & Denman, S., Sept 2020, In: Plant Pathology. 69, 7, p. 1301-1310 10 p.Research output: Contribution to journal › Article › peer-review
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Application of ecological and evolutionary theory to microbiome community dynamics across systems
McDonald, J., Marchesi, J. R. & Koskella, B., 23 Dec 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1941Research output: Contribution to journal › Article › peer-review
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Host–microbiota–insect interactions drive emergent virulence in a complex tree disease
Doonan, J., Broberg, M., Denman, S. & McDonald, J., 26 Aug 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1933Research output: Contribution to journal › Article › peer-review
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Impact of Sediment Concentration on the Survival of Wastewater-Derived blaCTX-M-15-Producing E. coli, and the Implications for Dispersal into Estuarine Waters
Bashawri, Y. M. A., Robins, P., Jones, D. L., McDonald, J., Cooper, D. & Williams, P., 19 Oct 2020, In: International Journal of Environmental Research and Public Health. 17, 20Research output: Contribution to journal › Article › peer-review
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Microbiomes of soils, plants and animals: an introduction
Antwis, R. E., Harrison, X. A., Cox, M. J., Carryl, S., Dewar, M., Doonan, J., Fry, E. L., Gilbert, J. A., Greenwood, B., Harris, R. N., Lewis, Z., Lizé, A., McDonald, J. E., McKenzie, V., Sze, M. & Zhu, F., 1 Jan 2020, Microbiomes of Soils, Plants and Animals: An Integrated Approach. Cambridge University Press, p. 1-7 7 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19
Jones, D. L., Baluja, M. Q., Graham, D. W., Corbishley, A., McDonald, J. E., Malham, S. K., Hillary, L. S., Connor, T. R., Gaze, W. H., Moura, I. B., Wilcox, M. H. & Farkas, K., 20 Dec 2020, In: Science of the Total Environment. 749Research output: Contribution to journal › Article › peer-review
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Survival of Brenneria goodwinii and Gibbsiella quercinecans, Associated with Acute Oak Decline, in Rainwater and Forest Soil
Pettifor, B. J., Doonan, J., Denman, S. & McDonald, J., Mar 2020, In: Systematic and Applied Microbiology. 43, 2Research output: Contribution to journal › Article › peer-review
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Viral indicators for tracking domestic wastewater contamination in the aquatic environment
Farkas, K., Walker, D., Adriaenssens, E., McDonald, J., Hillary, L., Malham, S. & Jones, D. L., 15 Aug 2020, In: Water Research. 181Research output: Contribution to journal › Article › peer-review
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Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19
Farkas, K., Hillary, L., Malham, S., McDonald, J. & Jones, D. L., Oct 2020, In: Current Opinion in Environmental Science & Health. 17, p. 14-20 7 p.Research output: Contribution to journal › Article › peer-review
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2019
Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment
Farkas, K., Adriaenssens, E. M., Walker, D. I., McDonald, J., Malham, S. & Jones, D. L., 1 Jun 2019, In: Food and Environmental Virology. 11, 2, p. 113-119 7 p.Research output: Contribution to journal › Article › peer-review
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Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue
Broberg, M. & McDonald, J., 5 Feb 2019, In: Methods and Protocols. 2, 1Research output: Contribution to journal › Article › peer-review
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Genomic analysis of bacteria in the Acute Oak Decline pathobiome
Doonan, J., Denman, S., Pachebat, J. A. & McDonald, J., 8 Jan 2019, In: Microbial Genomics. 5, 1Research output: Contribution to journal › Article › peer-review
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2018
Integrated multi-omic analysis of host-microbiota interactions in acute oak decline
Broberg, M., Doonan, J., Mundt, F. & McDonald, J., 30 Jan 2018, In: Microbiome. 6Research output: Contribution to journal › Article › peer-review
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Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline
Denman, S., Doonan, J., Ransom-Jones, E., Broberg, M., Plummer, S., Kirk, S. A., Scarlett, K., Griffiths, A., Kaczmarek, M., Foster, J., Peace, A., Golyshin, P., Hassard, F., Brown, N., Kenny, J. G. & McDonald, J., 2018, In: The ISME Journal. 12, p. 386-399 14 p.Research output: Contribution to journal › Article › peer-review
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Seasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses
Farkas, K., Marshall, M., Cooper, D., McDonald, J. E., Malham, S. K., Peters, D. E., Maloney, J. D. & Jones, D. L., Nov 2018, In: Environmental Science and Pollution Research. 25, 33, p. 33391-33401 11 p.Research output: Contribution to journal › Article › peer-review
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Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters
Malham, S., Farkas, K., McDonald, J., Jones, D. L., Cooper, D. & de Rougemont, A., 1 Sept 2018, In: Science of the Total Environment. 634Research output: Contribution to journal › Article › peer-review
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Two-Step Concentration of Complex Water Samples for the Detection of Viruses
Farkas, K., McDonald, J., Malham, S. & Jones, D. L., 10 Sept 2018, In: Methods and Protocols. 1, 3Research output: Contribution to journal › Article › peer-review
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2017
A communal catalogue reveals Earth's multiscale microbial diversity
The Earth Microbiome Project Consortium, 23 Nov 2017, In: Nature. 551, 7681, p. 457-+Research output: Contribution to journal › Article › peer-review
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Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective
Hassard, F., Sharp, J., Taft, H., Le Vay, L., Harris, J., McDonald, J., Tuson, K., Wilson, J., Jones, D. & Malham, S., Jun 2017, In: Food and Environmental Virology. 9, 2, p. 123-141 19 p.Research output: Contribution to journal › Article › peer-review
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Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment
Farkas, K., Hassard, F., McDonald, J., Malham, S. & Jones, D., 24 Jan 2017, In: Frontiers in Microbiology. 6, p. 1-12 12 p.Research output: Contribution to journal › Article › peer-review
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Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples
Farkas, K., Peters, D. E., McDonald, J., de Rougemont, A., Malham, S. & Jones, D., Sept 2017, In: Food and Environmental Virology. 9, 3, p. 342-349 8 p.Research output: Contribution to journal › Article › peer-review
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Fifty important research questions in microbial ecology
Antwis, R. E., Griffiths, S. M., Harrison, X. A., Aranega-Bou, P., Arce, A., Bettridge, A. S., Brailsford, F., de Menezes, A., Devaynes, A., Forbes, K. M., Fry, E. L., Goodhead, I., Haskell, E., Heys, C., James, C., Johnston, S. R., Lewis, G. R., Lewis, Z., Macey, M. C. & McCarthy, A. & 9 others, , May 2017, In: FEMS Microbiology Ecology . 93, 5Research output: Contribution to journal › Article › peer-review
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Identification of Armillaria species on declined oak in Britain: implications for oak health
Denman, S., Barrett, G., Kirk, S. A., McDonald, J. & Coetzee, M. P. A., 7 Jan 2017, In: Forestry. 90, 1, p. 148-161 14 p.Research output: Contribution to journal › Article › peer-review
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Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass- Degrading Diversity Emma
Ransom-Jones, E., McCarthy, A., Haldenby, S., Doonan, J. & McDonald, J., Aug 2017, In: mSphere. 2, 4Research output: Contribution to journal › Article › peer-review
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Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline
Kaczmarek, M., Mullett, M. S., McDonald, J. & Denman, S., 1 Jun 2017, In: PLoS ONE. 12, 6Research output: Contribution to journal › Article › peer-review
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Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment
Hassard, F., Andrews, A., Parsons, L., Jones, V., Cox, B. A., Daldorph, P., Brett, H., McDonald, J., Malham, S. & Jones, D. L., Oct 2017, In: Frontiers in Microbiology. 8Research output: Contribution to journal › Article › peer-review
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Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems
Potter, C., Freeman, C., Golyshin, P., Ackerman, G., Fenner, N., McDonald, J., Ehbair, A., Jones, T., Murphy, L. & Creer, S., Sept 2017, In: Scientific Reports. 7Research output: Contribution to journal › Article › peer-review
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Taxonomy and identification of bacteria associated with acute oak decline
Brady, C., Arnold, D., McDonald, J. & Denman, S., Jul 2017, In: World Journal of Microbiology and Biotechnology. 33, 7Research output: Contribution to journal › Article › peer-review
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2016
Abundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments—a Review
Hassard, F., Gwyther, C. L., Farkas, K., Andrews, A., Jones, V., Cox, B., Brett, H., Jones, D., McDonald, J. & Malham, S., 1 Nov 2016, In: Frontiers in Microbiology.Research output: Contribution to journal › Article › peer-review
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Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules
McDonald, J., Larsen, N., Pennington, A., Connolly, J., Wallis, C., Rooks, D. J., Hall, N., McCarthy, A. J. & Allison, H. E., 8 Jun 2016, In: PLoS ONE. 11, 6Research output: Contribution to journal › Article › peer-review
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Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations
Perkins, T. L., Perrow, K. A., Rajko-Nenow, P., Jago, C. F., Jones, D. L., Malham, S. K. & McDonald, J. E., 1 Dec 2016, In: Science of the Total Environment. 572, p. 1645-1652 8 p.Research output: Contribution to journal › Article › peer-review
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Draft Genome Sequence of Clostridium sp. strain W14A isolated from a cellulose-degrading biofilm in a landfill leachate microcosm
Ransom-Jones, E. & McDonald, J., 22 Sept 2016, In: Genome Announcements. 4, 5Research output: Contribution to journal › Article › peer-review
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Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline
Denman, S., Plummer, S., Peace, A. & McDonald, J., 1 Oct 2016, In: Systematic and Applied Microbiology. 39, 7, p. 484-490 7 p.Research output: Contribution to journal › Article › peer-review
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Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities
Doonan, J., Denman, S., McDonald, J. & Golyshin, P., 30 Nov 2016, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, Vol. 1539. p. 85-97 13 p. (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Spatial patterns and environmental constraints on ecosystem services at a catchment scale
Emmett, B., Cooper, D., Smart, S., Jackson, B., Thomas, A., Cosby, B., Evans, C., Glanville, H., McDonald, J., Malham, S., Marshall, M., Jarvis, S., Rajko-Nenow, P., Webb, G. P., Ward, S., Rowe, E., Jones, L., Vanbergen, E. J., Keith, A. & Carter, H. & 5 others, , 1 Dec 2016, In: Science of the Total Environment. 572, p. 1586-1600 15 p.Research output: Contribution to journal › Article › peer-review
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Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges
Winterbourn, J., Clements, K., Lowther, J. A., Malham, S., McDonald, J. & Jones, D., 15 Nov 2016, In: Water Research. 105, November, p. 241-250 10 p.Research output: Contribution to journal › Article › peer-review
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2015
Impact of climate change on UK estuaries: A review of past trends and potential projections
Robins, P. E., Skov, M. W., Lewis, M. J., Gimenez, L., Davies, A. G., Malham, S. K., Neill, S. P., McDonald, J. E., Whitton, T. A., Jackson, S. E. & Jago, C. F., 17 Dec 2015, In: Estuarine, Coastal and Shelf Science. 169, p. 119-135 17 p.Research output: Contribution to journal › Article › peer-review